miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 109625 0.66 0.899345
Target:  5'- gCCGCGCGcuaaccGCCcCGAUGGUCcGCCGa- -3'
miRNA:   3'- -GGUGUGUu-----CGGcGUUGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 130699 0.66 0.899345
Target:  5'- ---aACGAGaCCGCGGCGG-CGgCCGUg -3'
miRNA:   3'- ggugUGUUC-GGCGUUGCCaGC-GGCAa -5'
5499 3' -56 NC_001798.1 + 36021 0.66 0.897406
Target:  5'- aCCGCGCcuuggcuguuugggGGGUgGCGGCGGUgGUCGg- -3'
miRNA:   3'- -GGUGUG--------------UUCGgCGUUGCCAgCGGCaa -5'
5499 3' -56 NC_001798.1 + 8938 0.66 0.892801
Target:  5'- --uUAUGAGCUGCGGCGGgguggcCGCCGg- -3'
miRNA:   3'- gguGUGUUCGGCGUUGCCa-----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 28270 0.66 0.892801
Target:  5'- -aGCGCGGGCCGCAGCGcccccuucCGCCc-- -3'
miRNA:   3'- ggUGUGUUCGGCGUUGCca------GCGGcaa -5'
5499 3' -56 NC_001798.1 + 31351 0.66 0.892801
Target:  5'- gCGCGCAGG-CGCGGCGGgugggcgaagaCGCCGc- -3'
miRNA:   3'- gGUGUGUUCgGCGUUGCCa----------GCGGCaa -5'
5499 3' -56 NC_001798.1 + 3278 0.66 0.892801
Target:  5'- aCCGCGCGcucgucGGCCgGCGACGccGcCGCCGa- -3'
miRNA:   3'- -GGUGUGU------UCGG-CGUUGC--CaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 150792 0.66 0.892801
Target:  5'- cCCACcCccGcCCGCAACGGggCGCCGc- -3'
miRNA:   3'- -GGUGuGuuC-GGCGUUGCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 437 0.66 0.892801
Target:  5'- cCCGCGCGccacggGGCUGCGgucccGCGGcCGCCu-- -3'
miRNA:   3'- -GGUGUGU------UCGGCGU-----UGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 99213 0.66 0.886029
Target:  5'- -aGCuCAAGCCgGCGAaGGUCGCCa-- -3'
miRNA:   3'- ggUGuGUUCGG-CGUUgCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 137164 0.66 0.886029
Target:  5'- aCGCGCAGGaCGC--UGGUCGCgGUa -3'
miRNA:   3'- gGUGUGUUCgGCGuuGCCAGCGgCAa -5'
5499 3' -56 NC_001798.1 + 24183 0.67 0.879032
Target:  5'- uCgGCugGGGCCuggcGCAcgugGCGGcCGCCGUg -3'
miRNA:   3'- -GgUGugUUCGG----CGU----UGCCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 1347 0.67 0.879032
Target:  5'- cCCGCGCAGcuccgccgggccGCCGCGcACGG-CGUCGc- -3'
miRNA:   3'- -GGUGUGUU------------CGGCGU-UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 98620 0.67 0.877606
Target:  5'- cCCGCGCcucgggcggcguGGCCGCGACcGUCGCgGc- -3'
miRNA:   3'- -GGUGUGu-----------UCGGCGUUGcCAGCGgCaa -5'
5499 3' -56 NC_001798.1 + 9102 0.67 0.871816
Target:  5'- gCCACGggaaAGGCCGCGGgGGagcCGCCGc- -3'
miRNA:   3'- -GGUGUg---UUCGGCGUUgCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 9643 0.67 0.871816
Target:  5'- aCCGCccCGAGgCGCAGCGGgccgCGCgCGg- -3'
miRNA:   3'- -GGUGu-GUUCgGCGUUGCCa---GCG-GCaa -5'
5499 3' -56 NC_001798.1 + 23779 0.67 0.871816
Target:  5'- aCCGCgACGGGUaCGuCAGCGGggaGCCGUg -3'
miRNA:   3'- -GGUG-UGUUCG-GC-GUUGCCag-CGGCAa -5'
5499 3' -56 NC_001798.1 + 104092 0.67 0.864385
Target:  5'- gCGCACGAgcGCCGCcuGGCGGgCGCCc-- -3'
miRNA:   3'- gGUGUGUU--CGGCG--UUGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 66034 0.67 0.864385
Target:  5'- -gGCGCAuGCCGCG--GGUCGCCc-- -3'
miRNA:   3'- ggUGUGUuCGGCGUugCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 20179 0.67 0.864385
Target:  5'- gCACACGGGCUcgGCGGCGGguucaaaaugCGCCu-- -3'
miRNA:   3'- gGUGUGUUCGG--CGUUGCCa---------GCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.