miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 2509 0.71 0.64115
Target:  5'- -gGCGCGgcGGCCGCGGCGGcggCGUCGg- -3'
miRNA:   3'- ggUGUGU--UCGGCGUUGCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 106169 0.71 0.64115
Target:  5'- uCCGCAC-GGCCGCggUGauGUUGCCGg- -3'
miRNA:   3'- -GGUGUGuUCGGCGuuGC--CAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 92322 0.71 0.64115
Target:  5'- gCGCGC-AGCgGCGACGcggacGUCGCCGUc -3'
miRNA:   3'- gGUGUGuUCGgCGUUGC-----CAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 48177 0.71 0.661584
Target:  5'- gCCACGCAcgcccGGCUgGCGGCGGUacaGCUGUg -3'
miRNA:   3'- -GGUGUGU-----UCGG-CGUUGCCAg--CGGCAa -5'
5499 3' -56 NC_001798.1 + 150415 0.71 0.661584
Target:  5'- aCCACGgGGGCgGCGGCGG-CGCgGg- -3'
miRNA:   3'- -GGUGUgUUCGgCGUUGCCaGCGgCaa -5'
5499 3' -56 NC_001798.1 + 138136 0.71 0.671769
Target:  5'- gCCugGCgAAGCUGCuGCGGUCGCg--- -3'
miRNA:   3'- -GGugUG-UUCGGCGuUGCCAGCGgcaa -5'
5499 3' -56 NC_001798.1 + 149469 0.7 0.692035
Target:  5'- uCCACGCGggGGCCGCGGCccgcagcaGGUcCGCCa-- -3'
miRNA:   3'- -GGUGUGU--UCGGCGUUG--------CCA-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 71671 0.7 0.702098
Target:  5'- aCCugGCGAGCCuGCGGCGcaCGCuCGUg -3'
miRNA:   3'- -GGugUGUUCGG-CGUUGCcaGCG-GCAa -5'
5499 3' -56 NC_001798.1 + 37571 0.7 0.702098
Target:  5'- gUCAUGCGguuuuugggguGGUCGCggUGGUCGUCGUUa -3'
miRNA:   3'- -GGUGUGU-----------UCGGCGuuGCCAGCGGCAA- -5'
5499 3' -56 NC_001798.1 + 102538 0.7 0.702098
Target:  5'- cCCGCggccgGCAGGCCGCAcGCGGUCaGCgGc- -3'
miRNA:   3'- -GGUG-----UGUUCGGCGU-UGCCAG-CGgCaa -5'
5499 3' -56 NC_001798.1 + 48092 0.7 0.712102
Target:  5'- cCCAC-CGAGCC-CcACGG-CGCCGUg -3'
miRNA:   3'- -GGUGuGUUCGGcGuUGCCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 1275 0.7 0.722037
Target:  5'- gUCGCGCAgcaccAGCgGgGGCGcGUCGCCGUc -3'
miRNA:   3'- -GGUGUGU-----UCGgCgUUGC-CAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 16519 0.7 0.731896
Target:  5'- gUCACACGGGCCGCAuacguugcguUGGgugCGCCa-- -3'
miRNA:   3'- -GGUGUGUUCGGCGUu---------GCCa--GCGGcaa -5'
5499 3' -56 NC_001798.1 + 56632 0.7 0.731896
Target:  5'- gCACACAgccGGCCGUGcagaccgcAUGGUCGcCCGUa -3'
miRNA:   3'- gGUGUGU---UCGGCGU--------UGCCAGC-GGCAa -5'
5499 3' -56 NC_001798.1 + 2232 0.7 0.741668
Target:  5'- gCGCGCAgcgGGCCgaagGCGGCGGgcgCGCCGc- -3'
miRNA:   3'- gGUGUGU---UCGG----CGUUGCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 124407 0.7 0.741668
Target:  5'- gCCGCcuguuugcaACGAGCUGCcccGCGGUCGCgCGg- -3'
miRNA:   3'- -GGUG---------UGUUCGGCGu--UGCCAGCG-GCaa -5'
5499 3' -56 NC_001798.1 + 70068 0.7 0.741668
Target:  5'- gCCGCGucgcCGAGCgCGCAcgcCGGUCGCCa-- -3'
miRNA:   3'- -GGUGU----GUUCG-GCGUu--GCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 39804 0.69 0.751344
Target:  5'- aCCACACGccgguGGUCGCGggugGCGGaUCGUCGg- -3'
miRNA:   3'- -GGUGUGU-----UCGGCGU----UGCC-AGCGGCaa -5'
5499 3' -56 NC_001798.1 + 137983 0.69 0.751344
Target:  5'- cCCGCcuggGCGcGCCGCAgcucGCGGUCGCgCGc- -3'
miRNA:   3'- -GGUG----UGUuCGGCGU----UGCCAGCG-GCaa -5'
5499 3' -56 NC_001798.1 + 150748 0.69 0.751344
Target:  5'- uCgGCACGacGGCCGCGACGGcaggGCCGc- -3'
miRNA:   3'- -GgUGUGU--UCGGCGUUGCCag--CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.