miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 1393 0.77 0.343493
Target:  5'- gCCACguagACGGGCCGCAGCGGcgCGCCc-- -3'
miRNA:   3'- -GGUG----UGUUCGGCGUUGCCa-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 4045 0.76 0.364691
Target:  5'- gCCGCGCGGGCCcggcggcgcuccagGCGgcccGCGGUCGCCGc- -3'
miRNA:   3'- -GGUGUGUUCGG--------------CGU----UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 97198 0.76 0.366297
Target:  5'- -aGCGCGAGCUGCAgcaggagaccgccGCGGUgGCCGUg -3'
miRNA:   3'- ggUGUGUUCGGCGU-------------UGCCAgCGGCAa -5'
5499 3' -56 NC_001798.1 + 152987 0.75 0.41756
Target:  5'- aCCAUACcgggAAGCCgGCGcgggGCGGUCGCCGg- -3'
miRNA:   3'- -GGUGUG----UUCGG-CGU----UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 26369 0.75 0.444324
Target:  5'- gCUGCGCGGGCCGCGGCGGgaguucugCGCgCGg- -3'
miRNA:   3'- -GGUGUGUUCGGCGUUGCCa-------GCG-GCaa -5'
5499 3' -56 NC_001798.1 + 23662 0.75 0.462691
Target:  5'- gCCGC-CGGGCCcgcGCGGCGGUgGCCGg- -3'
miRNA:   3'- -GGUGuGUUCGG---CGUUGCCAgCGGCaa -5'
5499 3' -56 NC_001798.1 + 153381 0.74 0.490967
Target:  5'- gCCACGCGGcGCCGgAAcCGGUCGCgGUc -3'
miRNA:   3'- -GGUGUGUU-CGGCgUU-GCCAGCGgCAa -5'
5499 3' -56 NC_001798.1 + 26500 0.74 0.50057
Target:  5'- gCCGCGCGgggacggugcuGGCCGCGGCGGgcggCGgCGUg -3'
miRNA:   3'- -GGUGUGU-----------UCGGCGUUGCCa---GCgGCAa -5'
5499 3' -56 NC_001798.1 + 29391 0.74 0.510255
Target:  5'- aCCACucaGGGCCGCGccgGCGGggCGCCGg- -3'
miRNA:   3'- -GGUGug-UUCGGCGU---UGCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 3045 0.73 0.529853
Target:  5'- cCgGCAC-GGCCGCca-GGUCGCCGUc -3'
miRNA:   3'- -GgUGUGuUCGGCGuugCCAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 96883 0.73 0.54872
Target:  5'- aCGCcaACGAGCUGCGACGGUaccugccccacgcCGCCGg- -3'
miRNA:   3'- gGUG--UGUUCGGCGUUGCCA-------------GCGGCaa -5'
5499 3' -56 NC_001798.1 + 107028 0.72 0.590077
Target:  5'- gCACGCcuuauGCgGCGACGGaCGCCGUUu -3'
miRNA:   3'- gGUGUGuu---CGgCGUUGCCaGCGGCAA- -5'
5499 3' -56 NC_001798.1 + 37171 0.72 0.600259
Target:  5'- gCCugGCGGGCCGCu-CGGcgCGCCa-- -3'
miRNA:   3'- -GGugUGUUCGGCGuuGCCa-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 71073 0.72 0.609443
Target:  5'- aCCGCccUAAGCCGCGucagcccGCGGUCGgCGUg -3'
miRNA:   3'- -GGUGu-GUUCGGCGU-------UGCCAGCgGCAa -5'
5499 3' -56 NC_001798.1 + 77627 0.72 0.617619
Target:  5'- gCCACGCGAcGCCGCGccgACGaacuugaggccgccGUCGCCGa- -3'
miRNA:   3'- -GGUGUGUU-CGGCGU---UGC--------------CAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 68743 0.72 0.620687
Target:  5'- -gGCGCAGGCCGgGAUGGUaacgGCCGa- -3'
miRNA:   3'- ggUGUGUUCGGCgUUGCCAg---CGGCaa -5'
5499 3' -56 NC_001798.1 + 5945 0.72 0.620687
Target:  5'- gCGCACAuaaagGGCCgGCGuccCGGUCGCCGc- -3'
miRNA:   3'- gGUGUGU-----UCGG-CGUu--GCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 82168 0.72 0.620687
Target:  5'- aCCACGCGGccgcgguuuccGCCGCAGCGGcggcagUGCCGc- -3'
miRNA:   3'- -GGUGUGUU-----------CGGCGUUGCCa-----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 54379 0.71 0.630918
Target:  5'- cCCACcgGgGGGCCGCGgcGCGGUCGgCGg- -3'
miRNA:   3'- -GGUG--UgUUCGGCGU--UGCCAGCgGCaa -5'
5499 3' -56 NC_001798.1 + 97632 0.71 0.630918
Target:  5'- gCgACGCGGGCCGCcgcggacguGCGGgagCGCCGg- -3'
miRNA:   3'- -GgUGUGUUCGGCGu--------UGCCa--GCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.