miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 437 0.66 0.892801
Target:  5'- cCCGCGCGccacggGGCUGCGgucccGCGGcCGCCu-- -3'
miRNA:   3'- -GGUGUGU------UCGGCGU-----UGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 968 0.66 0.899345
Target:  5'- cUCACACAcGCgCGCGGCcaUCGCCGc- -3'
miRNA:   3'- -GGUGUGUuCG-GCGUUGccAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 1275 0.7 0.722037
Target:  5'- gUCGCGCAgcaccAGCgGgGGCGcGUCGCCGUc -3'
miRNA:   3'- -GGUGUGU-----UCGgCgUUGC-CAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 1347 0.67 0.879032
Target:  5'- cCCGCGCAGcuccgccgggccGCCGCGcACGG-CGUCGc- -3'
miRNA:   3'- -GGUGUGUU------------CGGCGU-UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 1393 0.77 0.343493
Target:  5'- gCCACguagACGGGCCGCAGCGGcgCGCCc-- -3'
miRNA:   3'- -GGUG----UGUUCGGCGUUGCCa-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 1433 0.66 0.899345
Target:  5'- gCGCGCAGGCgCGguGCGaGUgCGCCu-- -3'
miRNA:   3'- gGUGUGUUCG-GCguUGC-CA-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 1613 0.66 0.914099
Target:  5'- aCCGCACGuuggccccgcggcagAGgCGCAGCGGcggcgCGUCGg- -3'
miRNA:   3'- -GGUGUGU---------------UCgGCGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 2232 0.7 0.741668
Target:  5'- gCGCGCAgcgGGCCgaagGCGGCGGgcgCGCCGc- -3'
miRNA:   3'- gGUGUGU---UCGG----CGUUGCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 2509 0.71 0.64115
Target:  5'- -gGCGCGgcGGCCGCGGCGGcggCGUCGg- -3'
miRNA:   3'- ggUGUGU--UCGGCGUUGCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 3045 0.73 0.529853
Target:  5'- cCgGCAC-GGCCGCca-GGUCGCCGUc -3'
miRNA:   3'- -GgUGUGuUCGGCGuugCCAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 3140 0.67 0.853632
Target:  5'- uCCGCGCGccGGCCGCcgccaccaccgcCGG-CGCCGUc -3'
miRNA:   3'- -GGUGUGU--UCGGCGuu----------GCCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 3278 0.66 0.892801
Target:  5'- aCCGCGCGcucgucGGCCgGCGACGccGcCGCCGa- -3'
miRNA:   3'- -GGUGUGU------UCGG-CGUUGC--CaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 4045 0.76 0.364691
Target:  5'- gCCGCGCGGGCCcggcggcgcuccagGCGgcccGCGGUCGCCGc- -3'
miRNA:   3'- -GGUGUGUUCGG--------------CGU----UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 4488 0.68 0.824221
Target:  5'- uCCGCGgAcccagcGGcCCGCGucGCGGUCGUCGUc -3'
miRNA:   3'- -GGUGUgU------UC-GGCGU--UGCCAGCGGCAa -5'
5499 3' -56 NC_001798.1 + 5180 0.68 0.824221
Target:  5'- uCCugGC-GGCCGCGuCGGUaGCCGc- -3'
miRNA:   3'- -GGugUGuUCGGCGUuGCCAgCGGCaa -5'
5499 3' -56 NC_001798.1 + 5945 0.72 0.620687
Target:  5'- gCGCACAuaaagGGCCgGCGuccCGGUCGCCGc- -3'
miRNA:   3'- gGUGUGU-----UCGG-CGUu--GCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 8938 0.66 0.892801
Target:  5'- --uUAUGAGCUGCGGCGGgguggcCGCCGg- -3'
miRNA:   3'- gguGUGUUCGGCGUUGCCa-----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 9102 0.67 0.871816
Target:  5'- gCCACGggaaAGGCCGCGGgGGagcCGCCGc- -3'
miRNA:   3'- -GGUGUg---UUCGGCGUUgCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 9643 0.67 0.871816
Target:  5'- aCCGCccCGAGgCGCAGCGGgccgCGCgCGg- -3'
miRNA:   3'- -GGUGu-GUUCgGCGUUGCCa---GCG-GCaa -5'
5499 3' -56 NC_001798.1 + 16213 0.68 0.815634
Target:  5'- uCCGCACGcGCCGCcugugggggGGCGGUgggGCCGg- -3'
miRNA:   3'- -GGUGUGUuCGGCG---------UUGCCAg--CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.