miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 153381 0.74 0.490967
Target:  5'- gCCACGCGGcGCCGgAAcCGGUCGCgGUc -3'
miRNA:   3'- -GGUGUGUU-CGGCgUU-GCCAGCGgCAa -5'
5499 3' -56 NC_001798.1 + 153063 0.66 0.905657
Target:  5'- gCCGCccccugggGCGGGCggaGCGGCGGggcggCGCCGg- -3'
miRNA:   3'- -GGUG--------UGUUCGg--CGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 153035 0.67 0.856745
Target:  5'- cCCGCGC-GGCgGCGcGCGGUUgGCCGg- -3'
miRNA:   3'- -GGUGUGuUCGgCGU-UGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 152987 0.75 0.41756
Target:  5'- aCCAUACcgggAAGCCgGCGcgggGCGGUCGCCGg- -3'
miRNA:   3'- -GGUGUG----UUCGG-CGU----UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 150792 0.66 0.892801
Target:  5'- cCCACcCccGcCCGCAACGGggCGCCGc- -3'
miRNA:   3'- -GGUGuGuuC-GGCGUUGCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 150748 0.69 0.751344
Target:  5'- uCgGCACGacGGCCGCGACGGcaggGCCGc- -3'
miRNA:   3'- -GgUGUGU--UCGGCGUUGCCag--CGGCaa -5'
5499 3' -56 NC_001798.1 + 150415 0.71 0.661584
Target:  5'- aCCACGgGGGCgGCGGCGG-CGCgGg- -3'
miRNA:   3'- -GGUGUgUUCGgCGUUGCCaGCGgCaa -5'
5499 3' -56 NC_001798.1 + 149469 0.7 0.692035
Target:  5'- uCCACGCGggGGCCGCGGCccgcagcaGGUcCGCCa-- -3'
miRNA:   3'- -GGUGUGU--UCGGCGUUG--------CCA-GCGGcaa -5'
5499 3' -56 NC_001798.1 + 147019 0.69 0.760915
Target:  5'- cCCGgGCGGGCCGgGGCuuGGcCGCCGa- -3'
miRNA:   3'- -GGUgUGUUCGGCgUUG--CCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 146513 0.66 0.905657
Target:  5'- cCCGCGCcGGCCGCGGCGGagagaacccCUGUg -3'
miRNA:   3'- -GGUGUGuUCGGCGUUGCCagc------GGCAa -5'
5499 3' -56 NC_001798.1 + 144667 0.68 0.832632
Target:  5'- gUugGCAGGCCGUAAauCGcGUCGCCc-- -3'
miRNA:   3'- gGugUGUUCGGCGUU--GC-CAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 140185 0.68 0.840862
Target:  5'- gUACGCGGGCCGCcuGCGGccggUGCUGg- -3'
miRNA:   3'- gGUGUGUUCGGCGu-UGCCa---GCGGCaa -5'
5499 3' -56 NC_001798.1 + 138530 0.66 0.919281
Target:  5'- -gGCACA-GCCGCugaacggGcgaaucgaagaccagGCGGUCGCCGg- -3'
miRNA:   3'- ggUGUGUuCGGCG-------U---------------UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 138332 0.68 0.79797
Target:  5'- gCCGCACGAGaCGCGagGCGGccgaGCCGg- -3'
miRNA:   3'- -GGUGUGUUCgGCGU--UGCCag--CGGCaa -5'
5499 3' -56 NC_001798.1 + 138136 0.71 0.671769
Target:  5'- gCCugGCgAAGCUGCuGCGGUCGCg--- -3'
miRNA:   3'- -GGugUG-UUCGGCGuUGCCAGCGgcaa -5'
5499 3' -56 NC_001798.1 + 137983 0.69 0.751344
Target:  5'- cCCGCcuggGCGcGCCGCAgcucGCGGUCGCgCGc- -3'
miRNA:   3'- -GGUG----UGUuCGGCGU----UGCCAGCG-GCaa -5'
5499 3' -56 NC_001798.1 + 137929 0.67 0.856745
Target:  5'- cCCGCGCcucccccGGCCGCc-CGGUCcGCCGc- -3'
miRNA:   3'- -GGUGUGu------UCGGCGuuGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 137164 0.66 0.886029
Target:  5'- aCGCGCAGGaCGC--UGGUCGCgGUa -3'
miRNA:   3'- gGUGUGUUCgGCGuuGCCAGCGgCAa -5'
5499 3' -56 NC_001798.1 + 134176 0.67 0.864385
Target:  5'- gCCGCcCGcGCCGCGACGGcC-CCGg- -3'
miRNA:   3'- -GGUGuGUuCGGCGUUGCCaGcGGCaa -5'
5499 3' -56 NC_001798.1 + 133494 0.67 0.856745
Target:  5'- cCCGCGCGGGuCCGUgagcgaGACGGagcacgcgcugUCGCUGUUc -3'
miRNA:   3'- -GGUGUGUUC-GGCG------UUGCC-----------AGCGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.