miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 16519 0.7 0.731896
Target:  5'- gUCACACGGGCCGCAuacguugcguUGGgugCGCCa-- -3'
miRNA:   3'- -GGUGUGUUCGGCGUu---------GCCa--GCGGcaa -5'
5499 3' -56 NC_001798.1 + 18200 0.69 0.788909
Target:  5'- -gACACAGGCgCGCAGCc-UCGCCGg- -3'
miRNA:   3'- ggUGUGUUCG-GCGUUGccAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 20179 0.67 0.864385
Target:  5'- gCACACGGGCUcgGCGGCGGguucaaaaugCGCCu-- -3'
miRNA:   3'- gGUGUGUUCGG--CGUUGCCa---------GCGGcaa -5'
5499 3' -56 NC_001798.1 + 22288 0.67 0.848901
Target:  5'- gCCGCGCGGGCggaGCGGCGG-CGgCGc- -3'
miRNA:   3'- -GGUGUGUUCGg--CGUUGCCaGCgGCaa -5'
5499 3' -56 NC_001798.1 + 23662 0.75 0.462691
Target:  5'- gCCGC-CGGGCCcgcGCGGCGGUgGCCGg- -3'
miRNA:   3'- -GGUGuGUUCGG---CGUUGCCAgCGGCaa -5'
5499 3' -56 NC_001798.1 + 23779 0.67 0.871816
Target:  5'- aCCGCgACGGGUaCGuCAGCGGggaGCCGUg -3'
miRNA:   3'- -GGUG-UGUUCG-GC-GUUGCCag-CGGCAa -5'
5499 3' -56 NC_001798.1 + 24183 0.67 0.879032
Target:  5'- uCgGCugGGGCCuggcGCAcgugGCGGcCGCCGUg -3'
miRNA:   3'- -GgUGugUUCGG----CGU----UGCCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 24832 0.66 0.899345
Target:  5'- cCUGCGCGuggccGGCgGCAGCgaGGcCGCCGUg -3'
miRNA:   3'- -GGUGUGU-----UCGgCGUUG--CCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 24866 0.69 0.760915
Target:  5'- gCCGCcguGCGcGCCGUGAgccUGGUCGCCGg- -3'
miRNA:   3'- -GGUG---UGUuCGGCGUU---GCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 25107 0.67 0.856745
Target:  5'- cCCGCGCcccccgaagaaGAGCCGCG-CGGaCGCCc-- -3'
miRNA:   3'- -GGUGUG-----------UUCGGCGUuGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 25185 0.68 0.806881
Target:  5'- cCCGC-CGAcgccGCCGCcGCGGcCGCCGc- -3'
miRNA:   3'- -GGUGuGUU----CGGCGuUGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 26369 0.75 0.444324
Target:  5'- gCUGCGCGGGCCGCGGCGGgaguucugCGCgCGg- -3'
miRNA:   3'- -GGUGUGUUCGGCGUUGCCa-------GCG-GCaa -5'
5499 3' -56 NC_001798.1 + 26500 0.74 0.50057
Target:  5'- gCCGCGCGgggacggugcuGGCCGCGGCGGgcggCGgCGUg -3'
miRNA:   3'- -GGUGUGU-----------UCGGCGUUGCCa---GCgGCAa -5'
5499 3' -56 NC_001798.1 + 28075 0.68 0.840862
Target:  5'- gCGCGCcGGCCGCGuccucgcuccuGCGG-CGCUGg- -3'
miRNA:   3'- gGUGUGuUCGGCGU-----------UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 28270 0.66 0.892801
Target:  5'- -aGCGCGGGCCGCAGCGcccccuucCGCCc-- -3'
miRNA:   3'- ggUGUGUUCGGCGUUGCca------GCGGcaa -5'
5499 3' -56 NC_001798.1 + 29391 0.74 0.510255
Target:  5'- aCCACucaGGGCCGCGccgGCGGggCGCCGg- -3'
miRNA:   3'- -GGUGug-UUCGGCGU---UGCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 31351 0.66 0.892801
Target:  5'- gCGCGCAGG-CGCGGCGGgugggcgaagaCGCCGc- -3'
miRNA:   3'- gGUGUGUUCgGCGUUGCCa----------GCGGCaa -5'
5499 3' -56 NC_001798.1 + 32034 0.66 0.914099
Target:  5'- aCCGCggccACGGGCCGCucgccccggcguccGCGGgCGCCGc- -3'
miRNA:   3'- -GGUG----UGUUCGGCGu-------------UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 32307 0.68 0.832632
Target:  5'- cCCGCGCu-GCUGCGccGCGGggGCCGa- -3'
miRNA:   3'- -GGUGUGuuCGGCGU--UGCCagCGGCaa -5'
5499 3' -56 NC_001798.1 + 34955 0.67 0.848901
Target:  5'- aCGCGCGGcGCCGgAggggGCGGcCGCCGa- -3'
miRNA:   3'- gGUGUGUU-CGGCgU----UGCCaGCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.