miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 32034 0.66 0.914099
Target:  5'- aCCGCggccACGGGCCGCucgccccggcguccGCGGgCGCCGc- -3'
miRNA:   3'- -GGUG----UGUUCGGCGu-------------UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 1613 0.66 0.914099
Target:  5'- aCCGCACGuuggccccgcggcagAGgCGCAGCGGcggcgCGUCGg- -3'
miRNA:   3'- -GGUGUGU---------------UCgGCGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 94570 0.66 0.911734
Target:  5'- gCCGC-CAAGgCGCG--GGUCGCCa-- -3'
miRNA:   3'- -GGUGuGUUCgGCGUugCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 73964 0.66 0.911734
Target:  5'- aCGCGCGcGGCCGCGGgcucCGGgcCGCCGc- -3'
miRNA:   3'- gGUGUGU-UCGGCGUU----GCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 42753 0.66 0.911734
Target:  5'- cCCGCACAgacgGGCgGCGcGCGGg-GCCGa- -3'
miRNA:   3'- -GGUGUGU----UCGgCGU-UGCCagCGGCaa -5'
5499 3' -56 NC_001798.1 + 130272 0.66 0.905657
Target:  5'- aCCGCGCAuggAGCUGCGuACGcGUcgaagCGCCGa- -3'
miRNA:   3'- -GGUGUGU---UCGGCGU-UGC-CA-----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 153063 0.66 0.905657
Target:  5'- gCCGCccccugggGCGGGCggaGCGGCGGggcggCGCCGg- -3'
miRNA:   3'- -GGUG--------UGUUCGg--CGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 146513 0.66 0.905657
Target:  5'- cCCGCGCcGGCCGCGGCGGagagaacccCUGUg -3'
miRNA:   3'- -GGUGUGuUCGGCGUUGCCagc------GGCAa -5'
5499 3' -56 NC_001798.1 + 111326 0.66 0.908116
Target:  5'- aCCG-ACGAGCCGCAcgagcGCGGggaagggggacaugCGCCGc- -3'
miRNA:   3'- -GGUgUGUUCGGCGU-----UGCCa-------------GCGGCaa -5'
5499 3' -56 NC_001798.1 + 62530 0.66 0.911137
Target:  5'- aCGCGCAgcgGGUCGCGgaacaccGCGGcuaugUCGCCGg- -3'
miRNA:   3'- gGUGUGU---UCGGCGU-------UGCC-----AGCGGCaa -5'
5499 3' -56 NC_001798.1 + 124947 0.66 0.911734
Target:  5'- -aACACGAGCCGCAggaACGuGUUGaCCu-- -3'
miRNA:   3'- ggUGUGUUCGGCGU---UGC-CAGC-GGcaa -5'
5499 3' -56 NC_001798.1 + 66034 0.67 0.864385
Target:  5'- -gGCGCAuGCCGCG--GGUCGCCc-- -3'
miRNA:   3'- ggUGUGUuCGGCGUugCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 104092 0.67 0.864385
Target:  5'- gCGCACGAgcGCCGCcuGGCGGgCGCCc-- -3'
miRNA:   3'- gGUGUGUU--CGGCG--UUGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 134176 0.67 0.864385
Target:  5'- gCCGCcCGcGCCGCGACGGcC-CCGg- -3'
miRNA:   3'- -GGUGuGUuCGGCGUUGCCaGcGGCaa -5'
5499 3' -56 NC_001798.1 + 9102 0.67 0.871816
Target:  5'- gCCACGggaaAGGCCGCGGgGGagcCGCCGc- -3'
miRNA:   3'- -GGUGUg---UUCGGCGUUgCCa--GCGGCaa -5'
5499 3' -56 NC_001798.1 + 9643 0.67 0.871816
Target:  5'- aCCGCccCGAGgCGCAGCGGgccgCGCgCGg- -3'
miRNA:   3'- -GGUGu-GUUCgGCGUUGCCa---GCG-GCaa -5'
5499 3' -56 NC_001798.1 + 23779 0.67 0.871816
Target:  5'- aCCGCgACGGGUaCGuCAGCGGggaGCCGUg -3'
miRNA:   3'- -GGUG-UGUUCG-GC-GUUGCCag-CGGCAa -5'
5499 3' -56 NC_001798.1 + 98620 0.67 0.877606
Target:  5'- cCCGCGCcucgggcggcguGGCCGCGACcGUCGCgGc- -3'
miRNA:   3'- -GGUGUGu-----------UCGGCGUUGcCAGCGgCaa -5'
5499 3' -56 NC_001798.1 + 1347 0.67 0.879032
Target:  5'- cCCGCGCAGcuccgccgggccGCCGCGcACGG-CGUCGc- -3'
miRNA:   3'- -GGUGUGUU------------CGGCGU-UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 20179 0.67 0.864385
Target:  5'- gCACACGGGCUcgGCGGCGGguucaaaaugCGCCu-- -3'
miRNA:   3'- gGUGUGUUCGG--CGUUGCCa---------GCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.