miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 72246 0.67 0.656552
Target:  5'- --uGCGGCccgcGGUCcagcuGCCUCCCC-CCCaGCc -3'
miRNA:   3'- cuuUGCCG----UCAG-----CGGAGGGGcGGG-CG- -5'
5499 5' -60.8 NC_001798.1 + 86991 0.67 0.656552
Target:  5'- --cGCGGCuucuUCGCCgCCCuCGCCCa- -3'
miRNA:   3'- cuuUGCCGuc--AGCGGaGGG-GCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 30419 0.67 0.656552
Target:  5'- gGAcGCGGCca-CGCC-CCCgGCCCGg -3'
miRNA:   3'- -CUuUGCCGucaGCGGaGGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 152093 0.67 0.656552
Target:  5'- cGGGcCGGgGGUCgGCCccgucaagcgUCCCCGCCCcCg -3'
miRNA:   3'- -CUUuGCCgUCAG-CGG----------AGGGGCGGGcG- -5'
5499 5' -60.8 NC_001798.1 + 91091 0.67 0.646691
Target:  5'- gGAGGCGGCcGUCGUggaCCCCGgugcgcugcUCCGCg -3'
miRNA:   3'- -CUUUGCCGuCAGCGga-GGGGC---------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24844 0.67 0.646691
Target:  5'- -cGGCGGCAGcgaggcCGCCguggCCgCCGUgCGCg -3'
miRNA:   3'- cuUUGCCGUCa-----GCGGa---GG-GGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 28532 0.67 0.646691
Target:  5'- -cGACccccg-UGUCUCCCCGCCCGCa -3'
miRNA:   3'- cuUUGccgucaGCGGAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 91478 0.67 0.640769
Target:  5'- uGGGAUGGCGGU-GCCgauguuccCCCCGgcucuuaccggcggaCCCGCg -3'
miRNA:   3'- -CUUUGCCGUCAgCGGa-------GGGGC---------------GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 146751 0.67 0.63682
Target:  5'- uAAGCcGCcGgagaGCCcgagCCCCGCCCGCg -3'
miRNA:   3'- cUUUGcCGuCag--CGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 95384 0.67 0.63682
Target:  5'- cGggGCGGCGGUCGCCagCagcgUGUuuGUg -3'
miRNA:   3'- -CuuUGCCGUCAGCGGagGg---GCGggCG- -5'
5499 5' -60.8 NC_001798.1 + 102361 0.67 0.63682
Target:  5'- ---cCGGCGGcCGCCggaagcccaCCCGCCUGg -3'
miRNA:   3'- cuuuGCCGUCaGCGGag-------GGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 145709 0.67 0.63682
Target:  5'- ---uCGGCGGaccagcgaGCCccggCCCCgGCCCGCg -3'
miRNA:   3'- cuuuGCCGUCag------CGGa---GGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23005 0.67 0.63682
Target:  5'- cGGACGGC-GUCGUCUCgCCGCggcaGCu -3'
miRNA:   3'- cUUUGCCGuCAGCGGAGgGGCGgg--CG- -5'
5499 5' -60.8 NC_001798.1 + 75905 0.67 0.635833
Target:  5'- cGAGAUGcGC-GagGCCUuagacgcCCUCGCCCGCg -3'
miRNA:   3'- -CUUUGC-CGuCagCGGA-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 108663 0.67 0.633857
Target:  5'- cGGACGGCcgacgcaacgCGCCgCCCCcggggccGCCCGCg -3'
miRNA:   3'- cUUUGCCGuca-------GCGGaGGGG-------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 36640 0.67 0.626945
Target:  5'- cGGGCGGgGGcgCGCuUUCCCCGCgUCGCc -3'
miRNA:   3'- cUUUGCCgUCa-GCG-GAGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 74779 0.67 0.626945
Target:  5'- --cGCGGCcucgGGUccaccgcaCGCCgCCCCGCCCccGCa -3'
miRNA:   3'- cuuUGCCG----UCA--------GCGGaGGGGCGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 81233 0.67 0.626945
Target:  5'- ----aGGCAgGUC-CCUCUgccccgaccgCCGCCCGCg -3'
miRNA:   3'- cuuugCCGU-CAGcGGAGG----------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 89479 0.67 0.626945
Target:  5'- ---cCGGCAGgaugaaGcCCUUCUgGCCCGCa -3'
miRNA:   3'- cuuuGCCGUCag----C-GGAGGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 35545 0.67 0.626945
Target:  5'- --cGCGGgGcGUUGCCggCCCgGCCCGg -3'
miRNA:   3'- cuuUGCCgU-CAGCGGa-GGGgCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.