miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 135575 0.66 0.695736
Target:  5'- -cAACGGCAuaCGCCcgcgCCUCGCCCc- -3'
miRNA:   3'- cuUUGCCGUcaGCGGa---GGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 150678 0.66 0.695736
Target:  5'- --cGCGGCGucuUCGCC-CaCCCGCgCGCc -3'
miRNA:   3'- cuuUGCCGUc--AGCGGaG-GGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 92106 0.66 0.689897
Target:  5'- -cGACGGCGGgcagcagCcgucgaccacgcgcgGCCUCCCCcGUCUGCc -3'
miRNA:   3'- cuUUGCCGUCa------G---------------CGGAGGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 129739 0.66 0.686971
Target:  5'- -cAACGGCGGgaccccgacguggccCGCCcUCCUGCCaCGCu -3'
miRNA:   3'- cuUUGCCGUCa--------------GCGGaGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 85935 0.66 0.685995
Target:  5'- gGggGCGGagaCAGcUGCUgcacgcgcgCCgCCGCCCGCa -3'
miRNA:   3'- -CuuUGCC---GUCaGCGGa--------GG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 39549 0.66 0.685995
Target:  5'- -cGugGGUGG-CGCCggggCCguCCGUCCGCg -3'
miRNA:   3'- cuUugCCGUCaGCGGa---GG--GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 49316 0.66 0.685995
Target:  5'- --cACGGCGacGUgGCgUUCCCCacccuGCCCGCc -3'
miRNA:   3'- cuuUGCCGU--CAgCG-GAGGGG-----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 80896 0.66 0.685995
Target:  5'- ---cUGGCGG-CGCagCUCCCgCGCCUGUc -3'
miRNA:   3'- cuuuGCCGUCaGCG--GAGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 81286 0.66 0.685018
Target:  5'- gGGGAUGGCGGaUCGggucccgaggaccCCgcugCCCCcCCCGCa -3'
miRNA:   3'- -CUUUGCCGUC-AGC-------------GGa---GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24337 0.66 0.682086
Target:  5'- -cGACGGCGGcgaCGCCaaccgCCacgacggcgacgaCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa--GCGGa----GGg------------GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 31661 0.67 0.676212
Target:  5'- gGAcGCGGCcGg-GCCcgCgCCGCCCGCc -3'
miRNA:   3'- -CUuUGCCGuCagCGGa-GgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 75707 0.67 0.676212
Target:  5'- uGGAuCuGCAGcugcgCGCCgCCCCGCCgGCc -3'
miRNA:   3'- -CUUuGcCGUCa----GCGGaGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 4907 0.67 0.676212
Target:  5'- cGggGCcGcCGGUCGUCUCCgCCgcgGCCCGg -3'
miRNA:   3'- -CuuUGcC-GUCAGCGGAGG-GG---CGGGCg -5'
5499 5' -60.8 NC_001798.1 + 59831 0.67 0.666395
Target:  5'- uGggGCGccGCGGUCGCCcgcgUCCgGCUCGg -3'
miRNA:   3'- -CuuUGC--CGUCAGCGGa---GGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 100380 0.67 0.666395
Target:  5'- -cAACGaGCuG-CGCCUCaCCCGCgaCGCg -3'
miRNA:   3'- cuUUGC-CGuCaGCGGAG-GGGCGg-GCG- -5'
5499 5' -60.8 NC_001798.1 + 5356 0.67 0.666395
Target:  5'- --cGCGGCcc-CGCC-CCgaCGCCCGCg -3'
miRNA:   3'- cuuUGCCGucaGCGGaGGg-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25457 0.67 0.666395
Target:  5'- ---cCGGCGGcgCGCCcgCCgCCuucgGCCCGCu -3'
miRNA:   3'- cuuuGCCGUCa-GCGGa-GG-GG----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 70123 0.67 0.666395
Target:  5'- ---cCGGCGccCGCCggcaugacccCCCCGUCCGCu -3'
miRNA:   3'- cuuuGCCGUcaGCGGa---------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24417 0.67 0.665412
Target:  5'- -cGGCGGC-GUCGCCggCCgacgagcgcgcggUGCCCGCc -3'
miRNA:   3'- cuUUGCCGuCAGCGGagGG-------------GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 30419 0.67 0.656552
Target:  5'- gGAcGCGGCca-CGCC-CCCgGCCCGg -3'
miRNA:   3'- -CUuUGCCGucaGCGGaGGGgCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.