miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 143000 0.66 0.715063
Target:  5'- --cGCGGCuugCGCgaCCgaauaaCCGCCCGCa -3'
miRNA:   3'- cuuUGCCGucaGCGgaGG------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 135770 0.66 0.715063
Target:  5'- -cGGCGGcCGGcCGCCggCCCGCCgGa -3'
miRNA:   3'- cuUUGCC-GUCaGCGGagGGGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 126472 0.66 0.715063
Target:  5'- cGAGACGGCcaugaccUCGCCcccgucgCCCCcCUCGCa -3'
miRNA:   3'- -CUUUGCCGuc-----AGCGGa------GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 91774 0.66 0.715063
Target:  5'- aGAAgGGCGGccaCGCC-CCCUGCCgaugaCGCg -3'
miRNA:   3'- cUUUgCCGUCa--GCGGaGGGGCGG-----GCG- -5'
5499 5' -60.8 NC_001798.1 + 77250 0.66 0.715063
Target:  5'- cGGACGcGguGUCgGCC-CUgggcgcggCCGCCCGCg -3'
miRNA:   3'- cUUUGC-CguCAG-CGGaGG--------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 52058 0.66 0.715063
Target:  5'- uGggGCGcGaCuGUCGCgUggCCGCCCGCu -3'
miRNA:   3'- -CuuUGC-C-GuCAGCGgAggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 109290 0.66 0.714102
Target:  5'- --cGCGGCccacGcccacgacgcgauUCGCCUCUCCGaCCUGCu -3'
miRNA:   3'- cuuUGCCGu---C-------------AGCGGAGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 47920 0.66 0.713141
Target:  5'- -uGACGcGCGGggCGCCUaaggccuccgcgaCCCCggcgaccgaccccGCCCGCg -3'
miRNA:   3'- cuUUGC-CGUCa-GCGGA-------------GGGG-------------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 11179 0.66 0.705428
Target:  5'- gGggGCGGUGGggcggGCCUgCCgaacgGCCCGCu -3'
miRNA:   3'- -CuuUGCCGUCag---CGGAgGGg----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 69309 0.66 0.705428
Target:  5'- gGGGACGGuCAG-C-CCUCCCgCGCgCCGg -3'
miRNA:   3'- -CUUUGCC-GUCaGcGGAGGG-GCG-GGCg -5'
5499 5' -60.8 NC_001798.1 + 45929 0.66 0.705428
Target:  5'- gGGggUGGCGGUCGCgUccggaaCCCCucugggguagGCCCGg -3'
miRNA:   3'- -CUuuGCCGUCAGCGgA------GGGG----------CGGGCg -5'
5499 5' -60.8 NC_001798.1 + 90244 0.66 0.705428
Target:  5'- cGGAAaGGcCAGcUCGuCCUCCCC-CCCGg -3'
miRNA:   3'- -CUUUgCC-GUC-AGC-GGAGGGGcGGGCg -5'
5499 5' -60.8 NC_001798.1 + 1994 0.66 0.696708
Target:  5'- --cGCGGUccAGUUGCCcgCCCaggcggccguggcggGCCCGCa -3'
miRNA:   3'- cuuUGCCG--UCAGCGGa-GGGg--------------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 3129 0.66 0.695736
Target:  5'- --cGCGGCc--CGCCUCCgCgCGCCgGCc -3'
miRNA:   3'- cuuUGCCGucaGCGGAGG-G-GCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 3807 0.66 0.695736
Target:  5'- cGAACcgGGCccgCGCCUCCuCCGCCUcggGCg -3'
miRNA:   3'- cUUUG--CCGucaGCGGAGG-GGCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 55777 0.66 0.695736
Target:  5'- --cGCuGCAGcCGCCga-CCGCCUGCu -3'
miRNA:   3'- cuuUGcCGUCaGCGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 75282 0.66 0.695736
Target:  5'- --cGCGGCGcgcGaUGCCgCCCUGgCCCGCg -3'
miRNA:   3'- cuuUGCCGU---CaGCGGaGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 122001 0.66 0.695736
Target:  5'- ---cCGGC-GUCGCCUCggggcUCCGCCaggGCg -3'
miRNA:   3'- cuuuGCCGuCAGCGGAG-----GGGCGGg--CG- -5'
5499 5' -60.8 NC_001798.1 + 135575 0.66 0.695736
Target:  5'- -cAACGGCAuaCGCCcgcgCCUCGCCCc- -3'
miRNA:   3'- cuUUGCCGUcaGCGGa---GGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 92931 0.66 0.695736
Target:  5'- ----aGGCGGUCGUCgggCCCG-CCGCc -3'
miRNA:   3'- cuuugCCGUCAGCGGag-GGGCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.