miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 105743 0.74 0.279023
Target:  5'- cGggUGGguGUCGCCggcgacaaaugagUCCCCgcgcGCCCGCg -3'
miRNA:   3'- cUuuGCCguCAGCGG-------------AGGGG----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5392 0.74 0.282203
Target:  5'- -uGGCGGCGGcccguuggucgcgcCGCCgccgCUCCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa-------------GCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 16233 0.74 0.286057
Target:  5'- gGggGCGGUGGggcCGgggcCCUCCCCGCCCa- -3'
miRNA:   3'- -CuuUGCCGUCa--GC----GGAGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 138795 0.74 0.291915
Target:  5'- aGAAACgcccccaGGCGcugcGUCGCCUCCCC-CUCGCg -3'
miRNA:   3'- -CUUUG-------CCGU----CAGCGGAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 94986 0.74 0.292572
Target:  5'- cAGGCGGCGGcCGCCUgggCCCCGCagggcggCGCg -3'
miRNA:   3'- cUUUGCCGUCaGCGGA---GGGGCGg------GCG- -5'
5499 5' -60.8 NC_001798.1 + 43523 0.74 0.292572
Target:  5'- uAGGCGGCGGcCGCgUCuCCCGCCaggGCg -3'
miRNA:   3'- cUUUGCCGUCaGCGgAG-GGGCGGg--CG- -5'
5499 5' -60.8 NC_001798.1 + 25124 0.74 0.299202
Target:  5'- aGAGcCGcGCGGaCGCC-CCCCGCcCCGCg -3'
miRNA:   3'- -CUUuGC-CGUCaGCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 79963 0.74 0.299202
Target:  5'- cGGAGCGGCGG-CGCCgcgUCCgCCGCCgGg -3'
miRNA:   3'- -CUUUGCCGUCaGCGG---AGG-GGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 124275 0.74 0.299202
Target:  5'- --uGCGGCAGgCGaCC-CgCCGCCCGCg -3'
miRNA:   3'- cuuUGCCGUCaGC-GGaGgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 1164 0.74 0.305949
Target:  5'- --cGCGGCGGUCcccaccaCCUCCacgccgCCGCCCGCc -3'
miRNA:   3'- cuuUGCCGUCAGc------GGAGG------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 1874 0.74 0.305949
Target:  5'- uGAGGCGGCGGUCGCaggCgCCgGCCaGCa -3'
miRNA:   3'- -CUUUGCCGUCAGCGga-G-GGgCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 21783 0.74 0.305949
Target:  5'- aGGAACGGCc--CGCC-CCCCGUCCGg -3'
miRNA:   3'- -CUUUGCCGucaGCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 31152 0.73 0.31074
Target:  5'- gGggGCGGCGGUgcgggggcgacccgCGgaaCCUCCCaGCCCGCc -3'
miRNA:   3'- -CuuUGCCGUCA--------------GC---GGAGGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 105204 0.73 0.312811
Target:  5'- --cGCGGUGGgcgacggCGCUgCCCCGUCCGCa -3'
miRNA:   3'- cuuUGCCGUCa------GCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 151503 0.73 0.312811
Target:  5'- --cACGGCAcacacGUCGCCccCCCCuCCCGCu -3'
miRNA:   3'- cuuUGCCGU-----CAGCGGa-GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 668 0.73 0.312811
Target:  5'- gGAGACGuGCcGccCGCCcgacCCCCGCCCGCc -3'
miRNA:   3'- -CUUUGC-CGuCa-GCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 40019 0.73 0.312811
Target:  5'- --cGCGGCGG-C-CCUCCUCGuCCCGCu -3'
miRNA:   3'- cuuUGCCGUCaGcGGAGGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 68219 0.73 0.312811
Target:  5'- --cACGcGCAGgccCGCCaCCCCGCCgCGCg -3'
miRNA:   3'- cuuUGC-CGUCa--GCGGaGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 125286 0.73 0.319789
Target:  5'- cGAAACcGCAGgcgCGCCa--CCGCCCGCa -3'
miRNA:   3'- -CUUUGcCGUCa--GCGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 105264 0.73 0.326883
Target:  5'- --cGCGGCAucCGCCUCUUCGgCCGCg -3'
miRNA:   3'- cuuUGCCGUcaGCGGAGGGGCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.