miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 28356 0.85 0.057158
Target:  5'- -cGGCGGCGGcccccCGCgUCCCCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa----GCGgAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 67323 0.82 0.093366
Target:  5'- -cGACGGCGGUUcgGCCaUCCCCGCCgGCu -3'
miRNA:   3'- cuUUGCCGUCAG--CGG-AGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 27042 0.8 0.111551
Target:  5'- cGGGCGGCA--CGUCUCCCgCGCCCGCg -3'
miRNA:   3'- cUUUGCCGUcaGCGGAGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 122845 0.79 0.134345
Target:  5'- -cGGCGGCGGcUCGuCCcucucagcgacgacaUCCCCGCCCGCu -3'
miRNA:   3'- cuUUGCCGUC-AGC-GG---------------AGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 135053 0.79 0.136371
Target:  5'- gGAGGCGGcCGGcCGCCU-CCUGCCCGCc -3'
miRNA:   3'- -CUUUGCC-GUCaGCGGAgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 52800 0.78 0.154368
Target:  5'- cGGGACGGCAGacccCGCCUUCCUGCUCGa -3'
miRNA:   3'- -CUUUGCCGUCa---GCGGAGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 43336 0.77 0.174492
Target:  5'- gGggGCGGCAGUgcCGCC-CCCCGCgUCGUc -3'
miRNA:   3'- -CuuUGCCGUCA--GCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 420 0.77 0.174492
Target:  5'- --cGCGGCAGcC-CCUCCCC-CCCGCg -3'
miRNA:   3'- cuuUGCCGUCaGcGGAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 51185 0.77 0.192241
Target:  5'- cGGGCGGCGG-CGCCcCCCCGCCgGg -3'
miRNA:   3'- cUUUGCCGUCaGCGGaGGGGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 59203 0.76 0.206574
Target:  5'- ----aGGCAGuguUCGCCgCuCCCGCCCGCg -3'
miRNA:   3'- cuuugCCGUC---AGCGGaG-GGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 39826 0.76 0.206574
Target:  5'- -uGGCGGaucGUCGgCUCCCCGCCgCGCu -3'
miRNA:   3'- cuUUGCCgu-CAGCgGAGGGGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 39682 0.76 0.211554
Target:  5'- ---cCGGCGG-CGaCCUCgCCGCCCGCc -3'
miRNA:   3'- cuuuGCCGUCaGC-GGAGgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 128328 0.76 0.216636
Target:  5'- cGAAGCc---GUCGCC-CCCCGCCCGCu -3'
miRNA:   3'- -CUUUGccguCAGCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 134189 0.75 0.243634
Target:  5'- -cGACGGCcccGGcCGCCUCCCCGCUggaGCc -3'
miRNA:   3'- cuUUGCCG---UCaGCGGAGGGGCGGg--CG- -5'
5499 5' -60.8 NC_001798.1 + 76007 0.75 0.243634
Target:  5'- -cGGCGGCAGg-GCCccgUgCCCGCCCGCc -3'
miRNA:   3'- cuUUGCCGUCagCGG---AgGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 137922 0.75 0.255193
Target:  5'- cGGGCGGCccgCGCCUCCCCcGgCCGCc -3'
miRNA:   3'- cUUUGCCGucaGCGGAGGGG-CgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150763 0.75 0.255193
Target:  5'- -cGACGGCAGggcCGCCcccagacccagaUcccacCCCCGCCCGCa -3'
miRNA:   3'- cuUUGCCGUCa--GCGG------------A-----GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 103571 0.75 0.26114
Target:  5'- ----gGGCAGaggCGCCUCCaaCCGCUCGCg -3'
miRNA:   3'- cuuugCCGUCa--GCGGAGG--GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 3852 0.75 0.267199
Target:  5'- cGggGCGGCuGUCGCCcagCCCGCCguacaGCa -3'
miRNA:   3'- -CuuUGCCGuCAGCGGag-GGGCGGg----CG- -5'
5499 5' -60.8 NC_001798.1 + 25907 0.74 0.273371
Target:  5'- --cGCGGCAGcaCGCCUaCCUgGCCUGCg -3'
miRNA:   3'- cuuUGCCGUCa-GCGGA-GGGgCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.