miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 88 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 306 0.69 0.548632
Target:  5'- aAGACGcCAGUCGCa-CCaCCGCUCGCc -3'
miRNA:   3'- cUUUGCcGUCAGCGgaGG-GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 420 0.77 0.174492
Target:  5'- --cGCGGCAGcC-CCUCCCC-CCCGCg -3'
miRNA:   3'- cuuUGCCGUCaGcGGAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 448 0.7 0.473626
Target:  5'- cGggGCuGCGGUcccgcggcCGCCUcCCCCGCggCCGCc -3'
miRNA:   3'- -CuuUGcCGUCA--------GCGGA-GGGGCG--GGCG- -5'
5499 5' -60.8 NC_001798.1 + 668 0.73 0.312811
Target:  5'- gGAGACGuGCcGccCGCCcgacCCCCGCCCGCc -3'
miRNA:   3'- -CUUUGC-CGuCa-GCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 1164 0.74 0.305949
Target:  5'- --cGCGGCGGUCcccaccaCCUCCacgccgCCGCCCGCc -3'
miRNA:   3'- cuuUGCCGUCAGc------GGAGG------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 1874 0.74 0.305949
Target:  5'- uGAGGCGGCGGUCGCaggCgCCgGCCaGCa -3'
miRNA:   3'- -CUUUGCCGUCAGCGga-G-GGgCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 1994 0.66 0.696708
Target:  5'- --cGCGGUccAGUUGCCcgCCCaggcggccguggcggGCCCGCa -3'
miRNA:   3'- cuuUGCCG--UCAGCGGa-GGGg--------------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 2805 0.69 0.510556
Target:  5'- --cGCGGCAG-CGCCgggCCCaggGCCCcgGCg -3'
miRNA:   3'- cuuUGCCGUCaGCGGa--GGGg--CGGG--CG- -5'
5499 5' -60.8 NC_001798.1 + 3049 0.66 0.715063
Target:  5'- --cACGGCcgccaGGUCGCCgucgaagccCUCCGCCaGCg -3'
miRNA:   3'- cuuUGCCG-----UCAGCGGa--------GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 3129 0.66 0.695736
Target:  5'- --cGCGGCc--CGCCUCCgCgCGCCgGCc -3'
miRNA:   3'- cuuUGCCGucaGCGGAGG-G-GCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 3508 0.68 0.595404
Target:  5'- --cACGGCGGcCGCCacgugcgccaggCCCCagccgaagcgGCCCGCc -3'
miRNA:   3'- cuuUGCCGUCaGCGGa-----------GGGG----------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 3807 0.66 0.695736
Target:  5'- cGAACcgGGCccgCGCCUCCuCCGCCUcggGCg -3'
miRNA:   3'- cUUUG--CCGucaGCGGAGG-GGCGGG---CG- -5'
5499 5' -60.8 NC_001798.1 + 3852 0.75 0.267199
Target:  5'- cGggGCGGCuGUCGCCcagCCCGCCguacaGCa -3'
miRNA:   3'- -CuuUGCCGuCAGCGGag-GGGCGGg----CG- -5'
5499 5' -60.8 NC_001798.1 + 4013 0.68 0.59737
Target:  5'- uGAAGCGGCccguggcGUCGCggccggCCaCCGCCgCGCg -3'
miRNA:   3'- -CUUUGCCGu------CAGCGga----GG-GGCGG-GCG- -5'
5499 5' -60.8 NC_001798.1 + 4158 0.66 0.734126
Target:  5'- ----gGGCAccccCGCCUCCUCGUcguCCGCg -3'
miRNA:   3'- cuuugCCGUca--GCGGAGGGGCG---GGCG- -5'
5499 5' -60.8 NC_001798.1 + 4719 0.68 0.566062
Target:  5'- --cGCGGCAGgcucgucgacgGCCUCCCCGgaCGCc -3'
miRNA:   3'- cuuUGCCGUCag---------CGGAGGGGCggGCG- -5'
5499 5' -60.8 NC_001798.1 + 4907 0.67 0.676212
Target:  5'- cGggGCcGcCGGUCGUCUCCgCCgcgGCCCGg -3'
miRNA:   3'- -CuuUGcC-GUCAGCGGAGG-GG---CGGGCg -5'
5499 5' -60.8 NC_001798.1 + 5104 0.7 0.473626
Target:  5'- ---uUGGCAGUCuCuCUCCCC-CCCGUg -3'
miRNA:   3'- cuuuGCCGUCAGcG-GAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5356 0.67 0.666395
Target:  5'- --cGCGGCcc-CGCC-CCgaCGCCCGCg -3'
miRNA:   3'- cuuUGCCGucaGCGGaGGg-GCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.