miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 154426 0.69 0.510556
Target:  5'- cGGGCGGCAGg-GCagCCCCGCgCGCc -3'
miRNA:   3'- cUUUGCCGUCagCGgaGGGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 153832 0.7 0.482736
Target:  5'- -cGGCGuGCGGggccuccggCGCCUUCCC-CCCGCc -3'
miRNA:   3'- cuUUGC-CGUCa--------GCGGAGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 153081 0.69 0.519978
Target:  5'- cGGAGCGGCGGggcggCGCCgggCCCuCGCggauauauaCGCg -3'
miRNA:   3'- -CUUUGCCGUCa----GCGGa--GGG-GCGg--------GCG- -5'
5499 5' -60.8 NC_001798.1 + 153009 0.71 0.446829
Target:  5'- ----gGGCGGUCGCCggggcggagUCCggGCCCGCg -3'
miRNA:   3'- cuuugCCGUCAGCGG---------AGGggCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 152627 0.69 0.519978
Target:  5'- cAGAUGGgAGUCcccCCggcgCCCCGCCgGCg -3'
miRNA:   3'- cUUUGCCgUCAGc--GGa---GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 152093 0.67 0.656552
Target:  5'- cGGGcCGGgGGUCgGCCccgucaagcgUCCCCGCCCcCg -3'
miRNA:   3'- -CUUuGCCgUCAG-CGG----------AGGGGCGGGcG- -5'
5499 5' -60.8 NC_001798.1 + 151503 0.73 0.312811
Target:  5'- --cACGGCAcacacGUCGCCccCCCCuCCCGCu -3'
miRNA:   3'- cuuUGCCGU-----CAGCGGa-GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150966 0.68 0.58657
Target:  5'- aGAGACGGgagccccCGGUuagUGCCcgacCCCCGCCCGa -3'
miRNA:   3'- -CUUUGCC-------GUCA---GCGGa---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 150763 0.75 0.255193
Target:  5'- -cGACGGCAGggcCGCCcccagacccagaUcccacCCCCGCCCGCa -3'
miRNA:   3'- cuUUGCCGUCa--GCGG------------A-----GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150678 0.66 0.695736
Target:  5'- --cGCGGCGucuUCGCC-CaCCCGCgCGCc -3'
miRNA:   3'- cuuUGCCGUc--AGCGGaG-GGGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 150377 0.68 0.59737
Target:  5'- cGGGCGGCgcgggcccGGcCGCgUCCgCGCUCGCa -3'
miRNA:   3'- cUUUGCCG--------UCaGCGgAGGgGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 150169 0.66 0.724631
Target:  5'- -cGGgGGCGGgcCGCCgCCCCcUCCGCg -3'
miRNA:   3'- cuUUgCCGUCa-GCGGaGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 149790 0.68 0.617074
Target:  5'- gGAcGCGGaCGcGaCGCUcccaccagCCCCGCCCGCa -3'
miRNA:   3'- -CUuUGCC-GU-CaGCGGa-------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 147714 0.72 0.356418
Target:  5'- aGAAAgGGCAGgcaggucaGCCgcaCCGCCCGCg -3'
miRNA:   3'- -CUUUgCCGUCag------CGGaggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 147185 0.69 0.519978
Target:  5'- ----gGGCGGaaggCGUC-CCCCGCCCGg -3'
miRNA:   3'- cuuugCCGUCa---GCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 147078 0.68 0.607213
Target:  5'- ---uCGGCGGcCGCC-CCCUccgGCgCCGCg -3'
miRNA:   3'- cuuuGCCGUCaGCGGaGGGG---CG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 146751 0.67 0.63682
Target:  5'- uAAGCcGCcGgagaGCCcgagCCCCGCCCGCg -3'
miRNA:   3'- cUUUGcCGuCag--CGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 145709 0.67 0.63682
Target:  5'- ---uCGGCGGaccagcgaGCCccggCCCCgGCCCGCg -3'
miRNA:   3'- cuuuGCCGUCag------CGGa---GGGG-CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 145391 0.68 0.577761
Target:  5'- aGggGCGacGCGGggaaagCGCgC-CCCCGCCCGg -3'
miRNA:   3'- -CuuUGC--CGUCa-----GCG-GaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 144328 0.66 0.724631
Target:  5'- aGggGCGGC-GUCGCa---UCGCCCGa -3'
miRNA:   3'- -CuuUGCCGuCAGCGgaggGGCGGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.