miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 5392 0.74 0.282203
Target:  5'- -uGGCGGCGGcccguuggucgcgcCGCCgccgCUCCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa-------------GCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 5457 0.68 0.607213
Target:  5'- cGGGCGGCuucCGCU--UCCGCCCGCg -3'
miRNA:   3'- cUUUGCCGucaGCGGagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 9142 0.67 0.626945
Target:  5'- --uGCGGCAcgcgggCGCggCgCCGCCCGCg -3'
miRNA:   3'- cuuUGCCGUca----GCGgaGgGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 11179 0.66 0.705428
Target:  5'- gGggGCGGUGGggcggGCCUgCCgaacgGCCCGCu -3'
miRNA:   3'- -CuuUGCCGUCag---CGGAgGGg----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 14794 0.7 0.491931
Target:  5'- ---uCGGguGcgcguaUCGCCUgcgCCCCGCCCGg -3'
miRNA:   3'- cuuuGCCguC------AGCGGA---GGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 16233 0.74 0.286057
Target:  5'- gGggGCGGUGGggcCGgggcCCUCCCCGCCCa- -3'
miRNA:   3'- -CuuUGCCGUCa--GC----GGAGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 18463 0.69 0.552492
Target:  5'- aGAAGCGGCAguuuGUCGacacaccccccacuaCC-CCCCGCCCc- -3'
miRNA:   3'- -CUUUGCCGU----CAGC---------------GGaGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 21630 0.7 0.473626
Target:  5'- cGAucCGGguG-CGUCggugCCCCGCUCGCc -3'
miRNA:   3'- -CUuuGCCguCaGCGGa---GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 21783 0.74 0.305949
Target:  5'- aGGAACGGCc--CGCC-CCCCGUCCGg -3'
miRNA:   3'- -CUUUGCCGucaGCGGaGGGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 22195 0.71 0.429441
Target:  5'- cGGAAgGGCAGgggaGCgagCCCGCCCGCg -3'
miRNA:   3'- -CUUUgCCGUCag--CGgagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23005 0.67 0.63682
Target:  5'- cGGACGGC-GUCGUCUCgCCGCggcaGCu -3'
miRNA:   3'- cUUUGCCGuCAGCGGAGgGGCGgg--CG- -5'
5499 5' -60.8 NC_001798.1 + 23111 0.73 0.348861
Target:  5'- aGAAGCGGCccgcUCGCCUUCuCCG-CCGCg -3'
miRNA:   3'- -CUUUGCCGuc--AGCGGAGG-GGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23279 0.66 0.715063
Target:  5'- --cAUGGCcagccuGUCGCCgcgacCCCCGgcgcCCCGCc -3'
miRNA:   3'- cuuUGCCGu-----CAGCGGa----GGGGC----GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 23345 0.71 0.446829
Target:  5'- ---cCGGCg--CGCC-CCCCGCCgGCg -3'
miRNA:   3'- cuuuGCCGucaGCGGaGGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 24337 0.66 0.682086
Target:  5'- -cGACGGCGGcgaCGCCaaccgCCacgacggcgacgaCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa--GCGGa----GGg------------GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24417 0.67 0.665412
Target:  5'- -cGGCGGC-GUCGCCggCCgacgagcgcgcggUGCCCGCc -3'
miRNA:   3'- cuUUGCCGuCAGCGGagGG-------------GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24495 0.66 0.715063
Target:  5'- uGAGCGccGCGccCGCCUCCgCGCCgGCc -3'
miRNA:   3'- cUUUGC--CGUcaGCGGAGGgGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 24666 0.66 0.724631
Target:  5'- -uGGCGGCcgugccggGGcUgGCCggagCCCgGCCCGCc -3'
miRNA:   3'- cuUUGCCG--------UC-AgCGGa---GGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24730 0.69 0.535193
Target:  5'- --cGCGGCcGcccCGCCgcacgccgacgcgCCCCGCCUGCg -3'
miRNA:   3'- cuuUGCCGuCa--GCGGa------------GGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 24844 0.67 0.646691
Target:  5'- -cGGCGGCAGcgaggcCGCCguggCCgCCGUgCGCg -3'
miRNA:   3'- cuUUGCCGUCa-----GCGGa---GG-GGCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.