miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 25014 0.67 0.626945
Target:  5'- --cGCGGCcgacUCGCUcgCCgCGCCCGCc -3'
miRNA:   3'- cuuUGCCGuc--AGCGGa-GGgGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25124 0.74 0.299202
Target:  5'- aGAGcCGcGCGGaCGCC-CCCCGCcCCGCg -3'
miRNA:   3'- -CUUuGC-CGUCaGCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 25164 0.72 0.364088
Target:  5'- --cGCGGgGGccgCGCC-CCCCGCcCCGCc -3'
miRNA:   3'- cuuUGCCgUCa--GCGGaGGGGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 25233 0.68 0.577761
Target:  5'- ---cCGGCc--CGCCgagggCCCCGaCCCGCa -3'
miRNA:   3'- cuuuGCCGucaGCGGa----GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25434 0.66 0.734126
Target:  5'- --cGCGcGCuG-CGCCgCCCCGCCCc- -3'
miRNA:   3'- cuuUGC-CGuCaGCGGaGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 25457 0.67 0.666395
Target:  5'- ---cCGGCGGcgCGCCcgCCgCCuucgGCCCGCu -3'
miRNA:   3'- cuuuGCCGUCa-GCGGa-GG-GG----CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25907 0.74 0.273371
Target:  5'- --cGCGGCAGcaCGCCUaCCUgGCCUGCg -3'
miRNA:   3'- cuuUGCCGUCa-GCGGA-GGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 27042 0.8 0.111551
Target:  5'- cGGGCGGCA--CGUCUCCCgCGCCCGCg -3'
miRNA:   3'- cUUUGCCGUcaGCGGAGGG-GCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 27609 0.71 0.446829
Target:  5'- gGggGCGcGCGGggcugcccUGCCg-CCCGCCCGCc -3'
miRNA:   3'- -CuuUGC-CGUCa-------GCGGagGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 27716 0.71 0.420898
Target:  5'- cGggGCGGgAGUCcccguccuGCCgccgCCCCuuaagaggGCCCGCa -3'
miRNA:   3'- -CuuUGCCgUCAG--------CGGa---GGGG--------CGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28195 0.7 0.455669
Target:  5'- aGGGCGGgGGgaaggCGCCggaggCCCCGCacgCCGCg -3'
miRNA:   3'- cUUUGCCgUCa----GCGGa----GGGGCG---GGCG- -5'
5499 5' -60.8 NC_001798.1 + 28356 0.85 0.057158
Target:  5'- -cGGCGGCGGcccccCGCgUCCCCGCCCGCg -3'
miRNA:   3'- cuUUGCCGUCa----GCGgAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28532 0.67 0.646691
Target:  5'- -cGACccccg-UGUCUCCCCGCCCGCa -3'
miRNA:   3'- cuUUGccgucaGCGGAGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28785 0.69 0.547669
Target:  5'- gGAGGCGGCGG-CGgcggcgcgcggguCCUCCgCCG-CCGCg -3'
miRNA:   3'- -CUUUGCCGUCaGC-------------GGAGG-GGCgGGCG- -5'
5499 5' -60.8 NC_001798.1 + 28960 0.68 0.577761
Target:  5'- ---cCGGCGccgcccCGCCgCUCCGCCCGCc -3'
miRNA:   3'- cuuuGCCGUca----GCGGaGGGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 29092 0.66 0.724631
Target:  5'- uAGGCGGUcccGGcCGCCaUCCCCGCgCa- -3'
miRNA:   3'- cUUUGCCG---UCaGCGG-AGGGGCGgGcg -5'
5499 5' -60.8 NC_001798.1 + 29933 0.66 0.734126
Target:  5'- gGggGCGGgacgcuugaCGGg-GCCgacCCCCGgCCCGCu -3'
miRNA:   3'- -CuuUGCC---------GUCagCGGa--GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 30194 0.66 0.715063
Target:  5'- --cGCGGgGGUccCGCCUCa-CGCcCCGCg -3'
miRNA:   3'- cuuUGCCgUCA--GCGGAGggGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 30419 0.67 0.656552
Target:  5'- gGAcGCGGCca-CGCC-CCCgGCCCGg -3'
miRNA:   3'- -CUuUGCCGucaGCGGaGGGgCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 31152 0.73 0.31074
Target:  5'- gGggGCGGCGGUgcgggggcgacccgCGgaaCCUCCCaGCCCGCc -3'
miRNA:   3'- -CuuUGCCGUCA--------------GC---GGAGGGgCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.