miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 3' -61.6 NC_001798.1 + 3609 0.79 0.105513
Target:  5'- aGCUGCUGUUGcGcGCCGCGCCCGagauCCGg -3'
miRNA:   3'- aCGACGACAACcC-CGGCGUGGGU----GGC- -5'
5500 3' -61.6 NC_001798.1 + 51950 0.77 0.146137
Target:  5'- cGCUGCUcagcgcgGgaGGGGCCGCGCCCcCCc -3'
miRNA:   3'- aCGACGA-------CaaCCCCGGCGUGGGuGGc -5'
5500 3' -61.6 NC_001798.1 + 121690 0.77 0.161789
Target:  5'- cGCgGCUG--GGGGCCGCGgcuCCCGCCGc -3'
miRNA:   3'- aCGaCGACaaCCCCGGCGU---GGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 149062 0.74 0.237504
Target:  5'- gUGUUGCUGUUcGGGGCCGUGuccguccccccccCCCACUc -3'
miRNA:   3'- -ACGACGACAA-CCCCGGCGU-------------GGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 12893 0.73 0.261336
Target:  5'- gUGCUGgUGUacgggggcuUGGGGCCGUgccACCCGgCGa -3'
miRNA:   3'- -ACGACgACA---------ACCCCGGCG---UGGGUgGC- -5'
5500 3' -61.6 NC_001798.1 + 106016 0.72 0.320413
Target:  5'- cGCUcuCUGgUGGGGCCGgaugACCCGCCGu -3'
miRNA:   3'- aCGAc-GACaACCCCGGCg---UGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 138145 0.72 0.327562
Target:  5'- aGCUGCUGc---GGUCGCGCCC-CCGg -3'
miRNA:   3'- aCGACGACaaccCCGGCGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 55003 0.71 0.349712
Target:  5'- cGUcuUGCcGgcGGGGCCGC-CCUGCCGg -3'
miRNA:   3'- aCG--ACGaCaaCCCCGGCGuGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 139053 0.71 0.349712
Target:  5'- cGCUGCgGcUGGaGGCCGCgGgCCACCa -3'
miRNA:   3'- aCGACGaCaACC-CCGGCG-UgGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 92918 0.71 0.349712
Target:  5'- cGcCUGCUGUUcgaGGcGGUCGUcggGCCCGCCGc -3'
miRNA:   3'- aC-GACGACAA---CC-CCGGCG---UGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 140207 0.71 0.365061
Target:  5'- gUGCUGgUGUgcgUGGGGUCGCcgACCCAgaCGg -3'
miRNA:   3'- -ACGACgACA---ACCCCGGCG--UGGGUg-GC- -5'
5500 3' -61.6 NC_001798.1 + 25164 0.7 0.405423
Target:  5'- ---cGCg---GGGGCCGCGCCCcCCGc -3'
miRNA:   3'- acgaCGacaaCCCCGGCGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 27548 0.7 0.430951
Target:  5'- cGC-GCggggGgaGGGGCgGCGCCCGCgGg -3'
miRNA:   3'- aCGaCGa---CaaCCCCGgCGUGGGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 71223 0.7 0.430951
Target:  5'- cUGCUGCaGcuagGGGaGCCGCcCuCCGCCGg -3'
miRNA:   3'- -ACGACGaCaa--CCC-CGGCGuG-GGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 40829 0.7 0.431818
Target:  5'- gGCcGCUGguuccgcguuuuugGGGGCCGagcCCCGCCGc -3'
miRNA:   3'- aCGaCGACaa------------CCCCGGCgu-GGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 140104 0.69 0.448483
Target:  5'- gGCcggGCUccUGGGGCgGCACCUACUc -3'
miRNA:   3'- aCGa--CGAcaACCCCGgCGUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 116528 0.69 0.466402
Target:  5'- cGCUGCUGcaccgcgGGGGuCCGCuuCgACCGc -3'
miRNA:   3'- aCGACGACaa-----CCCC-GGCGugGgUGGC- -5'
5500 3' -61.6 NC_001798.1 + 27167 0.69 0.484685
Target:  5'- gGCUGCUGcgagcucGGGGCCGCGggCGCgGg -3'
miRNA:   3'- aCGACGACaa-----CCCCGGCGUggGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 60154 0.69 0.484685
Target:  5'- cGUcuugGC-GUUGGcGGCCGCuugGCCCGCCu -3'
miRNA:   3'- aCGa---CGaCAACC-CCGGCG---UGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 23567 0.68 0.493954
Target:  5'- cGCgaggGCcccgGGGGCgGCGCCCcgGCCGa -3'
miRNA:   3'- aCGa---CGacaaCCCCGgCGUGGG--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.