miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 3' -61.6 NC_001798.1 + 3609 0.79 0.105513
Target:  5'- aGCUGCUGUUGcGcGCCGCGCCCGagauCCGg -3'
miRNA:   3'- aCGACGACAACcC-CGGCGUGGGU----GGC- -5'
5500 3' -61.6 NC_001798.1 + 12893 0.73 0.261336
Target:  5'- gUGCUGgUGUacgggggcuUGGGGCCGUgccACCCGgCGa -3'
miRNA:   3'- -ACGACgACA---------ACCCCGGCG---UGGGUgGC- -5'
5500 3' -61.6 NC_001798.1 + 16221 0.68 0.541418
Target:  5'- cGCcGcCUGUgggggggcggUGGGGCCGgggcccucccCGCCCACCu -3'
miRNA:   3'- aCGaC-GACA----------ACCCCGGC----------GUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 20358 0.66 0.659747
Target:  5'- cGCUGCcgggcggGUUcGGGGCgGCACgCAggauCCGa -3'
miRNA:   3'- aCGACGa------CAA-CCCCGgCGUGgGU----GGC- -5'
5500 3' -61.6 NC_001798.1 + 22346 0.68 0.551102
Target:  5'- cGCggGCgucggGgcGGGGCCGCGCauaaugcgguuCCACCu -3'
miRNA:   3'- aCGa-CGa----CaaCCCCGGCGUG-----------GGUGGc -5'
5500 3' -61.6 NC_001798.1 + 23567 0.68 0.493954
Target:  5'- cGCgaggGCcccgGGGGCgGCGCCCcgGCCGa -3'
miRNA:   3'- aCGa---CGacaaCCCCGgCGUGGG--UGGC- -5'
5500 3' -61.6 NC_001798.1 + 24128 0.66 0.629964
Target:  5'- gGCaGCgUGgcGcGGGCCGUGcCCCACCu -3'
miRNA:   3'- aCGaCG-ACaaC-CCCGGCGU-GGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 24473 0.67 0.570622
Target:  5'- gUGCUcGCcGcccUGGGgcgccugagcGCCGCGCCCGCCu -3'
miRNA:   3'- -ACGA-CGaCa--ACCC----------CGGCGUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 25164 0.7 0.405423
Target:  5'- ---cGCg---GGGGCCGCGCCCcCCGc -3'
miRNA:   3'- acgaCGacaaCCCCGGCGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 25820 0.66 0.629964
Target:  5'- gGCUGCUGgccGGcGCCuGCGaCCGCCGc -3'
miRNA:   3'- aCGACGACaacCC-CGG-CGUgGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 27167 0.69 0.484685
Target:  5'- gGCUGCUGcgagcucGGGGCCGCGggCGCgGg -3'
miRNA:   3'- aCGACGACaa-----CCCCGGCGUggGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 27548 0.7 0.430951
Target:  5'- cGC-GCggggGgaGGGGCgGCGCCCGCgGg -3'
miRNA:   3'- aCGaCGa---CaaCCCCGgCGUGGGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 31865 0.68 0.551102
Target:  5'- cGCcGCgGagGGGGCgGCGgCCCGCCc -3'
miRNA:   3'- aCGaCGaCaaCCCCGgCGU-GGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 32566 0.67 0.580447
Target:  5'- -cCUGCUGc--GGGCCGCGgCCC-CCGc -3'
miRNA:   3'- acGACGACaacCCCGGCGU-GGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 39995 0.68 0.511783
Target:  5'- cGCUGCUGUcggacucGGGGUCGUcgcggcgGCCCuCCu -3'
miRNA:   3'- aCGACGACAa------CCCCGGCG-------UGGGuGGc -5'
5500 3' -61.6 NC_001798.1 + 40829 0.7 0.431818
Target:  5'- gGCcGCUGguuccgcguuuuugGGGGCCGagcCCCGCCGc -3'
miRNA:   3'- aCGaCGACaa------------CCCCGGCgu-GGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 44913 0.68 0.493954
Target:  5'- gUGCUGUgcgGUUGGGGaaCGCGCCC-Cg- -3'
miRNA:   3'- -ACGACGa--CAACCCCg-GCGUGGGuGgc -5'
5500 3' -61.6 NC_001798.1 + 48359 0.68 0.551102
Target:  5'- cGCgGCcGcccGGGGCCGC-CCCGCgGg -3'
miRNA:   3'- aCGaCGaCaa-CCCCGGCGuGGGUGgC- -5'
5500 3' -61.6 NC_001798.1 + 51950 0.77 0.146137
Target:  5'- cGCUGCUcagcgcgGgaGGGGCCGCGCCCcCCc -3'
miRNA:   3'- aCGACGA-------CaaCCCCGGCGUGGGuGGc -5'
5500 3' -61.6 NC_001798.1 + 53571 0.66 0.64983
Target:  5'- gUGCUGCUGc---GGCC-CACCCugCu -3'
miRNA:   3'- -ACGACGACaaccCCGGcGUGGGugGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.