miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 36617 0.66 0.993933
Target:  5'- gCCGGgcgGgGGCGcGCgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUa--UgUUGUuUG-CGCUGGCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 36575 0.66 0.993933
Target:  5'- gCCGGgcgGgGGCGcGCgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUa--UgUUGUuUG-CGCUGGCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 36533 0.66 0.993933
Target:  5'- gCCGGgcgGgGGCGcGCgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUa--UgUUGUuUG-CGCUGGCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 153017 0.66 0.993933
Target:  5'- gCCGggGCGgaguccggGCccGCGCGGCgGCGCGc -3'
miRNA:   3'- aGGCuaUGU--------UGuuUGCGCUGgCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 98748 0.67 0.993384
Target:  5'- cCCGAgGCGaccccgccccccgacGCcAACGCGACCGuCGCc -3'
miRNA:   3'- aGGCUaUGU---------------UGuUUGCGCUGGC-GUGc -5'
5500 5' -50.6 NC_001798.1 + 150367 0.67 0.992996
Target:  5'- aCCGGcACGGCGggcGGCGCGGgcccggccgcguCCGCGCu -3'
miRNA:   3'- aGGCUaUGUUGU---UUGCGCU------------GGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 27218 0.67 0.992996
Target:  5'- cCCGGggcggggcGCGGgGGAgGCGGCCGCGgGg -3'
miRNA:   3'- aGGCUa-------UGUUgUUUgCGCUGGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 9648 0.67 0.992996
Target:  5'- cCCGAggcGCAGCGGgccgcGCGCGGaggGCGCGg -3'
miRNA:   3'- aGGCUa--UGUUGUU-----UGCGCUgg-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 153818 0.67 0.992996
Target:  5'- --gGcgGCGGCAGGCGCGG-CGUGCGg -3'
miRNA:   3'- aggCuaUGUUGUUUGCGCUgGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 54653 0.67 0.992996
Target:  5'- cCCGA-GCAGCGgccggcagccgcGGCGCGcCCGCucGCGg -3'
miRNA:   3'- aGGCUaUGUUGU------------UUGCGCuGGCG--UGC- -5'
5500 5' -50.6 NC_001798.1 + 146579 0.67 0.992996
Target:  5'- gCCGcgGgcCAGCAGACG-GGCCGCGgCGc -3'
miRNA:   3'- aGGCuaU--GUUGUUUGCgCUGGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 3712 0.67 0.992996
Target:  5'- gUCCGGcgugUACAGCAGccGCGUGAUCaGgGCGu -3'
miRNA:   3'- -AGGCU----AUGUUGUU--UGCGCUGG-CgUGC- -5'
5500 5' -50.6 NC_001798.1 + 24124 0.67 0.991947
Target:  5'- cUCCG--GCAGCGuGGCGCGgGCCGUGCc -3'
miRNA:   3'- -AGGCuaUGUUGU-UUGCGC-UGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 142975 0.67 0.991947
Target:  5'- aUCCGAggaccGCGuguaauACuuGCGCGGCUuGCGCGa -3'
miRNA:   3'- -AGGCUa----UGU------UGuuUGCGCUGG-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 47018 0.67 0.991947
Target:  5'- cCCGGggaGCcgcCGAACGCGGCaggCGCACGc -3'
miRNA:   3'- aGGCUa--UGuu-GUUUGCGCUG---GCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 131569 0.67 0.990776
Target:  5'- cCCGGUGCGu--AACuGUGGuCCGCGCGc -3'
miRNA:   3'- aGGCUAUGUuguUUG-CGCU-GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 106093 0.67 0.990776
Target:  5'- gUCGcgGCGACccggcgcCGCGACCGC-CGg -3'
miRNA:   3'- aGGCuaUGUUGuuu----GCGCUGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 24332 0.67 0.990776
Target:  5'- cCCGAcgACGGCGgcGACGCcaACCGcCACGa -3'
miRNA:   3'- aGGCUa-UGUUGU--UUGCGc-UGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 1830 0.67 0.990776
Target:  5'- cCCGu--CGGCGGGCcaguccGCGGCgCGCACGg -3'
miRNA:   3'- aGGCuauGUUGUUUG------CGCUG-GCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 30768 0.67 0.990776
Target:  5'- gCCGAgGCGGCcguGCG-GGCCgGCACGg -3'
miRNA:   3'- aGGCUaUGUUGuu-UGCgCUGG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.