miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 76746 0.66 0.996156
Target:  5'- -gCGAUGCucAACGAcGCGCGGgaGCGCGc -3'
miRNA:   3'- agGCUAUG--UUGUU-UGCGCUggCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 92540 0.66 0.996156
Target:  5'- cCUGAcgcggcucUGCgAGCGGGCGCGcCCGCAUu -3'
miRNA:   3'- aGGCU--------AUG-UUGUUUGCGCuGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 105606 0.66 0.996156
Target:  5'- gUUCGAggGCGGCGGGCGggcgaCGACgGCGCu -3'
miRNA:   3'- -AGGCUa-UGUUGUUUGC-----GCUGgCGUGc -5'
5500 5' -50.6 NC_001798.1 + 153237 0.66 0.996095
Target:  5'- cCCGcgGCGGCGGaggacccGCGCGccGCCGC-CGc -3'
miRNA:   3'- aGGCuaUGUUGUU-------UGCGC--UGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 72374 0.66 0.995505
Target:  5'- gUCCGc--CAGCuggaGGACGCGAUCGUGCu -3'
miRNA:   3'- -AGGCuauGUUG----UUUGCGCUGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 21740 0.66 0.995505
Target:  5'- cCUGGUGCGGCGgcgaccggGACGCcGGCCcuuuauguGCGCGa -3'
miRNA:   3'- aGGCUAUGUUGU--------UUGCG-CUGG--------CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 72635 0.66 0.995505
Target:  5'- cUCGGgguaUGCGACGAGCugGCGGCCcaggucucGCACGa -3'
miRNA:   3'- aGGCU----AUGUUGUUUG--CGCUGG--------CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 82153 0.66 0.995505
Target:  5'- cCCGGgaccCAGCcgaccACGCGGCCGCGg- -3'
miRNA:   3'- aGGCUau--GUUGuu---UGCGCUGGCGUgc -5'
5500 5' -50.6 NC_001798.1 + 85038 0.66 0.995505
Target:  5'- cCCGGgggUGCcguCGAGCGCcGCCGUGCGc -3'
miRNA:   3'- aGGCU---AUGuu-GUUUGCGcUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 109770 0.66 0.995505
Target:  5'- gUCCGAcgucgcGCGGCGAcccACGCcgaucuccgGGCCGCGCu -3'
miRNA:   3'- -AGGCUa-----UGUUGUU---UGCG---------CUGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 141457 0.66 0.995505
Target:  5'- uUCCGggGCuGCGAGCuGCugaccggcucGCCGCGCGg -3'
miRNA:   3'- -AGGCuaUGuUGUUUG-CGc---------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 72191 0.66 0.995505
Target:  5'- aUCGA-GCAGCugcuGCGCGAgCUGUACGu -3'
miRNA:   3'- aGGCUaUGUUGuu--UGCGCU-GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 2685 0.66 0.994767
Target:  5'- gCgGGcGCGGCGAGCGaguCGGCCGCgGCGa -3'
miRNA:   3'- aGgCUaUGUUGUUUGC---GCUGGCG-UGC- -5'
5500 5' -50.6 NC_001798.1 + 17971 0.66 0.994767
Target:  5'- gUCCGG-ACGuCGGGgGgGGCUGCGCGg -3'
miRNA:   3'- -AGGCUaUGUuGUUUgCgCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 25188 0.66 0.994767
Target:  5'- gCCGAcGCcGCcgcCGCGGCCGcCGCGc -3'
miRNA:   3'- aGGCUaUGuUGuuuGCGCUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 79960 0.66 0.994767
Target:  5'- gUCCGGaGCGGCGGcgcCGCGuCCGC-CGc -3'
miRNA:   3'- -AGGCUaUGUUGUUu--GCGCuGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 73956 0.66 0.994767
Target:  5'- -gCGAgugGACGcGCGCGGCCGCGgGc -3'
miRNA:   3'- agGCUaugUUGUuUGCGCUGGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 5612 0.66 0.994688
Target:  5'- gUCCGcggGCGGCuccgccccaaaggGGGCGgGGCCGCAgGg -3'
miRNA:   3'- -AGGCua-UGUUG-------------UUUGCgCUGGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 81098 0.66 0.993933
Target:  5'- -aCGuucucGCGGCGAGCGCcGCCGaCGCGg -3'
miRNA:   3'- agGCua---UGUUGUUUGCGcUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 36617 0.66 0.993933
Target:  5'- gCCGGgcgGgGGCGcGCgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUa--UgUUGUuUG-CGCUGGCgUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.