miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 24715 0.72 0.89929
Target:  5'- cCCGggGCccGCGGGCGCGgccgccccGCCGCACGc -3'
miRNA:   3'- aGGCuaUGu-UGUUUGCGC--------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 24749 0.66 0.997228
Target:  5'- gCCGAcGCGccccGCcuGCGCGccugGCUGCGCGa -3'
miRNA:   3'- aGGCUaUGU----UGuuUGCGC----UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 24805 0.66 0.996156
Target:  5'- gCUGGUGCu---GAUGCGcCUGCGCGg -3'
miRNA:   3'- aGGCUAUGuuguUUGCGCuGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 24842 0.69 0.967393
Target:  5'- gCCGGcgGCAGCGAGgccgcCGUGGCCGC-CGu -3'
miRNA:   3'- aGGCUa-UGUUGUUU-----GCGCUGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 25188 0.66 0.994767
Target:  5'- gCCGAcGCcGCcgcCGCGGCCGcCGCGc -3'
miRNA:   3'- aGGCUaUGuUGuuuGCGCUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 26709 0.69 0.97047
Target:  5'- gUCUG-UGCGccuuuaagACAGACGCGgcgaugGCCGCGCGc -3'
miRNA:   3'- -AGGCuAUGU--------UGUUUGCGC------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 27218 0.67 0.992996
Target:  5'- cCCGGggcggggcGCGGgGGAgGCGGCCGCGgGg -3'
miRNA:   3'- aGGCUa-------UGUUgUUUgCGCUGGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 27483 0.7 0.948589
Target:  5'- gCCGcgcgGgGGCGGGCGCGggaaaaaaGCCGCGCGg -3'
miRNA:   3'- aGGCua--UgUUGUUUGCGC--------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 28256 0.68 0.980714
Target:  5'- gCCGccgcGCAAgGAGCGCGgGCCGCAgCGc -3'
miRNA:   3'- aGGCua--UGUUgUUUGCGC-UGGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 28376 0.71 0.93441
Target:  5'- cCCGc--CcGCGGACGCG-CCGCGCGg -3'
miRNA:   3'- aGGCuauGuUGUUUGCGCuGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 29000 0.68 0.980714
Target:  5'- gCCGGc-CAACc-GCGCGccGCCGCGCGg -3'
miRNA:   3'- aGGCUauGUUGuuUGCGC--UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 30680 0.66 0.993933
Target:  5'- cCCGGUggcguaccugAUAGUggGCGUGACCGCcaGCGg -3'
miRNA:   3'- aGGCUA----------UGUUGuuUGCGCUGGCG--UGC- -5'
5500 5' -50.6 NC_001798.1 + 30768 0.67 0.990776
Target:  5'- gCCGAgGCGGCcguGCG-GGCCgGCACGg -3'
miRNA:   3'- aGGCUaUGUUGuu-UGCgCUGG-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 31380 0.69 0.976748
Target:  5'- gCCGcgGCGGCGGAgggcaggacgcccccCGCGAgacagccCCGCGCGg -3'
miRNA:   3'- aGGCuaUGUUGUUU---------------GCGCU-------GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 31641 0.69 0.973333
Target:  5'- cCCGuggugucUGCGagcGCGGACGCGGCCGgGCc -3'
miRNA:   3'- aGGCu------AUGU---UGUUUGCGCUGGCgUGc -5'
5500 5' -50.6 NC_001798.1 + 31686 0.71 0.929183
Target:  5'- gCCGugcCggUGGACGCGcACCGCGCGc -3'
miRNA:   3'- aGGCuauGuuGUUUGCGC-UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 31759 0.75 0.766339
Target:  5'- gUCUGGgccgGGCAGGCGCGACCGaCGCGc -3'
miRNA:   3'- -AGGCUaug-UUGUUUGCGCUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 35048 0.66 0.996674
Target:  5'- cCCGAgGCAAgAGGCG-GACCcucggagGCGCGg -3'
miRNA:   3'- aGGCUaUGUUgUUUGCgCUGG-------CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 36494 0.74 0.830592
Target:  5'- gCCGGcGCGACGcGgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUaUGUUGUuUgCGCUGGCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 36533 0.66 0.993933
Target:  5'- gCCGGgcgGgGGCGcGCgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUa--UgUUGUuUG-CGCUGGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.