miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 104857 0.72 0.905766
Target:  5'- gUUCGGUACAGCAGAUacaGACacaGCACGg -3'
miRNA:   3'- -AGGCUAUGUUGUUUGcg-CUGg--CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 150445 0.72 0.905766
Target:  5'- cUCCGGacGCGcgGGGCGaCGGCCGCGCGg -3'
miRNA:   3'- -AGGCUa-UGUugUUUGC-GCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 23197 0.71 0.917976
Target:  5'- -aCGAUgACGACGaccgcGACGCgGGCCGCugGg -3'
miRNA:   3'- agGCUA-UGUUGU-----UUGCG-CUGGCGugC- -5'
5500 5' -50.6 NC_001798.1 + 6097 0.71 0.917976
Target:  5'- aUCgGAUACAG-AGACGCGGgCGCAuCGg -3'
miRNA:   3'- -AGgCUAUGUUgUUUGCGCUgGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 22324 0.71 0.917976
Target:  5'- gCCGccGCcACGGACGCGGaCGCGCGg -3'
miRNA:   3'- aGGCuaUGuUGUUUGCGCUgGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 31686 0.71 0.929183
Target:  5'- gCCGugcCggUGGACGCGcACCGCGCGc -3'
miRNA:   3'- aGGCuauGuuGUUUGCGC-UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 115131 0.71 0.929183
Target:  5'- cCCcagACAAC--GCGCGugCGCGCGg -3'
miRNA:   3'- aGGcuaUGUUGuuUGCGCugGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 125284 0.71 0.929183
Target:  5'- cCCGAaACcGCAGGCGCGccACCGCcCGc -3'
miRNA:   3'- aGGCUaUGuUGUUUGCGC--UGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 109373 0.71 0.929183
Target:  5'- cCCGGggaGCAGCGGgcuGCGCGGCCGacuCGg -3'
miRNA:   3'- aGGCUa--UGUUGUU---UGCGCUGGCgu-GC- -5'
5500 5' -50.6 NC_001798.1 + 109714 0.71 0.93441
Target:  5'- gCCGA-GCAGCGggAACGCGcCCGC-CGg -3'
miRNA:   3'- aGGCUaUGUUGU--UUGCGCuGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 28376 0.71 0.93441
Target:  5'- cCCGc--CcGCGGACGCG-CCGCGCGg -3'
miRNA:   3'- aGGCuauGuUGUUUGCGCuGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 147908 0.71 0.938899
Target:  5'- cCCGggGgGGCAGGCGCGGgucgggcCCGUACGc -3'
miRNA:   3'- aGGCuaUgUUGUUUGCGCU-------GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 97618 0.71 0.939385
Target:  5'- gCUGggGCGACAucgcGACGCGgGCCGcCGCGg -3'
miRNA:   3'- aGGCuaUGUUGU----UUGCGC-UGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 48367 0.71 0.939385
Target:  5'- cCCGggGCcgccccgcggGGCGugccgcCGCGACCGCACGg -3'
miRNA:   3'- aGGCuaUG----------UUGUuu----GCGCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 82365 0.7 0.944111
Target:  5'- cCCGccGC-GCGGACGCGcauCCGCGCGc -3'
miRNA:   3'- aGGCuaUGuUGUUUGCGCu--GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 37204 0.7 0.944111
Target:  5'- gCCGA-ACGACGGGCGCGG-CGC-CGg -3'
miRNA:   3'- aGGCUaUGUUGUUUGCGCUgGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 96154 0.7 0.944111
Target:  5'- gCCGGgugACucGCcAugGCGGCCGCGCc -3'
miRNA:   3'- aGGCUa--UGu-UGuUugCGCUGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 119336 0.7 0.948589
Target:  5'- gCUGAUGCAggacgGCGAACGCaGGCUGC-CGc -3'
miRNA:   3'- aGGCUAUGU-----UGUUUGCG-CUGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 27483 0.7 0.948589
Target:  5'- gCCGcgcgGgGGCGGGCGCGggaaaaaaGCCGCGCGg -3'
miRNA:   3'- aGGCua--UgUUGUUUGCGC--------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 78556 0.7 0.948589
Target:  5'- -gCGGgccUGCGGgAGGCGCuGGCCGCGCGc -3'
miRNA:   3'- agGCU---AUGUUgUUUGCG-CUGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.