miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 77204 0.84 0.316197
Target:  5'- cCCGcgGCGACGgugGACGCGGCCGUGCGg -3'
miRNA:   3'- aGGCuaUGUUGU---UUGCGCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 48330 0.77 0.685591
Target:  5'- cCCGAcGCGGCGcaggacgucGACGCGACCGCGg- -3'
miRNA:   3'- aGGCUaUGUUGU---------UUGCGCUGGCGUgc -5'
5500 5' -50.6 NC_001798.1 + 48198 0.76 0.710357
Target:  5'- -gCGGUACAGCugugggacauguCGCGGCCGCACa -3'
miRNA:   3'- agGCUAUGUUGuuu---------GCGCUGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 2243 0.76 0.71649
Target:  5'- gCCGAagGCGGCGGGCGCG-CCGC-CGg -3'
miRNA:   3'- aGGCUa-UGUUGUUUGCGCuGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 80486 0.76 0.736727
Target:  5'- aCCGAgUACGACAgcuucGACGCccuccuGGCCGCACGc -3'
miRNA:   3'- aGGCU-AUGUUGU-----UUGCG------CUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 77700 0.75 0.756581
Target:  5'- cCCGGggcaGCAGCGAGCGCugGGCCGC-CGg -3'
miRNA:   3'- aGGCUa---UGUUGUUUGCG--CUGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 31759 0.75 0.766339
Target:  5'- gUCUGGgccgGGCAGGCGCGACCGaCGCGc -3'
miRNA:   3'- -AGGCUaug-UUGUUUGCGCUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 48129 0.74 0.830592
Target:  5'- gCCGGguuCAACAAGCGCGucuuCUGCGCc -3'
miRNA:   3'- aGGCUau-GUUGUUUGCGCu---GGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 36494 0.74 0.830592
Target:  5'- gCCGGcGCGACGcGgGCGGCCGgGCGg -3'
miRNA:   3'- aGGCUaUGUUGUuUgCGCUGGCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 37125 0.74 0.830592
Target:  5'- uUCCGGUgACGGCGAggugugugaGCGUGGCCGCucGCGc -3'
miRNA:   3'- -AGGCUA-UGUUGUU---------UGCGCUGGCG--UGC- -5'
5500 5' -50.6 NC_001798.1 + 43169 0.73 0.863331
Target:  5'- gCCGccGCGGCAAACGCcuGGCCGguCGg -3'
miRNA:   3'- aGGCuaUGUUGUUUGCG--CUGGCguGC- -5'
5500 5' -50.6 NC_001798.1 + 104808 0.73 0.878412
Target:  5'- cCCGAacGCAACGggAGCGCGAUCGCGa- -3'
miRNA:   3'- aGGCUa-UGUUGU--UUGCGCUGGCGUgc -5'
5500 5' -50.6 NC_001798.1 + 1590 0.72 0.892569
Target:  5'- gCCGAaGCGcguGCGcACGCGguACCGCACGu -3'
miRNA:   3'- aGGCUaUGU---UGUuUGCGC--UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 52502 0.72 0.892569
Target:  5'- gCCGGcGCAGgGAcgacGCgGCGGCCGCGCGc -3'
miRNA:   3'- aGGCUaUGUUgUU----UG-CGCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 108576 0.72 0.892569
Target:  5'- cCCGGgccuggGUAACAuuCGCGGCCGCGCc -3'
miRNA:   3'- aGGCUa-----UGUUGUuuGCGCUGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 47763 0.72 0.898629
Target:  5'- uUCgGAcgACGACGAgucccgggauaccGCGCGACCGCGuCGu -3'
miRNA:   3'- -AGgCUa-UGUUGUU-------------UGCGCUGGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 24715 0.72 0.89929
Target:  5'- cCCGggGCccGCGGGCGCGgccgccccGCCGCACGc -3'
miRNA:   3'- aGGCuaUGu-UGUUUGCGC--------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 53090 0.72 0.89929
Target:  5'- cUCCGccAUGCAACGccgGGCGCG-CgGCGCGa -3'
miRNA:   3'- -AGGC--UAUGUUGU---UUGCGCuGgCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 132692 0.72 0.89929
Target:  5'- gCCGAcGCGgcGCAGGCGCGGgggUCGCGCa -3'
miRNA:   3'- aGGCUaUGU--UGUUUGCGCU---GGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 145387 0.72 0.904491
Target:  5'- cCCGAgggGCGACGcggggaaAGCGCGcccccgcccggccGCCGCGCGc -3'
miRNA:   3'- aGGCUa--UGUUGU-------UUGCGC-------------UGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.