miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 1590 0.72 0.892569
Target:  5'- gCCGAaGCGcguGCGcACGCGguACCGCACGu -3'
miRNA:   3'- aGGCUaUGU---UGUuUGCGC--UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 1830 0.67 0.990776
Target:  5'- cCCGu--CGGCGGGCcaguccGCGGCgCGCACGg -3'
miRNA:   3'- aGGCuauGUUGUUUG------CGCUG-GCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 2243 0.76 0.71649
Target:  5'- gCCGAagGCGGCGGGCGCG-CCGC-CGg -3'
miRNA:   3'- aGGCUa-UGUUGUUUGCGCuGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 2685 0.66 0.994767
Target:  5'- gCgGGcGCGGCGAGCGaguCGGCCGCgGCGa -3'
miRNA:   3'- aGgCUaUGUUGUUUGC---GCUGGCG-UGC- -5'
5500 5' -50.6 NC_001798.1 + 3308 0.67 0.988037
Target:  5'- gCCGAcgGCAACGGG-GCGGCgGCGgCGg -3'
miRNA:   3'- aGGCUa-UGUUGUUUgCGCUGgCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 3712 0.67 0.992996
Target:  5'- gUCCGGcgugUACAGCAGccGCGUGAUCaGgGCGu -3'
miRNA:   3'- -AGGCU----AUGUUGUU--UGCGCUGG-CgUGC- -5'
5500 5' -50.6 NC_001798.1 + 5612 0.66 0.994688
Target:  5'- gUCCGcggGCGGCuccgccccaaaggGGGCGgGGCCGCAgGg -3'
miRNA:   3'- -AGGCua-UGUUG-------------UUUGCgCUGGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 6097 0.71 0.917976
Target:  5'- aUCgGAUACAG-AGACGCGGgCGCAuCGg -3'
miRNA:   3'- -AGgCUAUGUUgUUUGCGCUgGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 9139 0.68 0.978447
Target:  5'- gUCUGcgGCAcGCGGGCGCGgcGCCGCccGCGc -3'
miRNA:   3'- -AGGCuaUGU-UGUUUGCGC--UGGCG--UGC- -5'
5500 5' -50.6 NC_001798.1 + 9648 0.67 0.992996
Target:  5'- cCCGAggcGCAGCGGgccgcGCGCGGaggGCGCGg -3'
miRNA:   3'- aGGCUa--UGUUGUU-----UGCGCUgg-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 17971 0.66 0.994767
Target:  5'- gUCCGG-ACGuCGGGgGgGGCUGCGCGg -3'
miRNA:   3'- -AGGCUaUGUuGUUUgCgCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 20258 0.68 0.98645
Target:  5'- cCCGAgaucUGCAGCAG--GCGGCCcCACGu -3'
miRNA:   3'- aGGCU----AUGUUGUUugCGCUGGcGUGC- -5'
5500 5' -50.6 NC_001798.1 + 21740 0.66 0.995505
Target:  5'- cCUGGUGCGGCGgcgaccggGACGCcGGCCcuuuauguGCGCGa -3'
miRNA:   3'- aGGCUAUGUUGU--------UUGCG-CUGG--------CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 22324 0.71 0.917976
Target:  5'- gCCGccGCcACGGACGCGGaCGCGCGg -3'
miRNA:   3'- aGGCuaUGuUGUUUGCGCUgGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 23197 0.71 0.917976
Target:  5'- -aCGAUgACGACGaccgcGACGCgGGCCGCugGg -3'
miRNA:   3'- agGCUA-UGUUGU-----UUGCG-CUGGCGugC- -5'
5500 5' -50.6 NC_001798.1 + 23237 0.69 0.97599
Target:  5'- aCCGGagACGACGucCGCGGuCCGCGgGg -3'
miRNA:   3'- aGGCUa-UGUUGUuuGCGCU-GGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 23665 0.69 0.97047
Target:  5'- gCCGGgcccgcGCGGCGGugGcCGGCCGCgACGc -3'
miRNA:   3'- aGGCUa-----UGUUGUUugC-GCUGGCG-UGC- -5'
5500 5' -50.6 NC_001798.1 + 24124 0.67 0.991947
Target:  5'- cUCCG--GCAGCGuGGCGCGgGCCGUGCc -3'
miRNA:   3'- -AGGCuaUGUUGU-UUGCGC-UGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 24332 0.67 0.990776
Target:  5'- cCCGAcgACGGCGgcGACGCcaACCGcCACGa -3'
miRNA:   3'- aGGCUa-UGUUGU--UUGCGc-UGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 24527 0.7 0.956815
Target:  5'- gCCGAcgACGACGacGACGaCGACgGCGCc -3'
miRNA:   3'- aGGCUa-UGUUGU--UUGC-GCUGgCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.