miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 154073 0.69 0.97442
Target:  5'- gCCGGggcGCGGCAcggcuggagcgccggGGCGCGGCCgGCGCc -3'
miRNA:   3'- aGGCUa--UGUUGU---------------UUGCGCUGG-CGUGc -5'
5500 5' -50.6 NC_001798.1 + 153958 0.68 0.980714
Target:  5'- gCCGcaGgAGCGagGACGCGGCCgGCGCGc -3'
miRNA:   3'- aGGCuaUgUUGU--UUGCGCUGG-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 153818 0.67 0.992996
Target:  5'- --gGcgGCGGCAGGCGCGG-CGUGCGg -3'
miRNA:   3'- aggCuaUGUUGUUUGCGCUgGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 153237 0.66 0.996095
Target:  5'- cCCGcgGCGGCGGaggacccGCGCGccGCCGC-CGc -3'
miRNA:   3'- aGGCuaUGUUGUU-------UGCGC--UGGCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 153017 0.66 0.993933
Target:  5'- gCCGggGCGgaguccggGCccGCGCGGCgGCGCGc -3'
miRNA:   3'- aGGCuaUGU--------UGuuUGCGCUGgCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 150747 0.68 0.980714
Target:  5'- cUCGGcACGACGGcCGCGACgGCAgGg -3'
miRNA:   3'- aGGCUaUGUUGUUuGCGCUGgCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 150445 0.72 0.905766
Target:  5'- cUCCGGacGCGcgGGGCGaCGGCCGCGCGg -3'
miRNA:   3'- -AGGCUa-UGUugUUUGC-GCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 150367 0.67 0.992996
Target:  5'- aCCGGcACGGCGggcGGCGCGGgcccggccgcguCCGCGCu -3'
miRNA:   3'- aGGCUaUGUUGU---UUGCGCU------------GGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 149283 0.68 0.984707
Target:  5'- cCCGAgaccACGGguGGCGCGACCGgAgGc -3'
miRNA:   3'- aGGCUa---UGUUguUUGCGCUGGCgUgC- -5'
5500 5' -50.6 NC_001798.1 + 147908 0.71 0.938899
Target:  5'- cCCGggGgGGCAGGCGCGGgucgggcCCGUACGc -3'
miRNA:   3'- aGGCuaUgUUGUUUGCGCU-------GGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 146579 0.67 0.992996
Target:  5'- gCCGcgGgcCAGCAGACG-GGCCGCGgCGc -3'
miRNA:   3'- aGGCuaU--GUUGUUUGCgCUGGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 146497 0.69 0.964095
Target:  5'- gCCGGgccgGCAACGccccGCGcCGGCCGCGgCGg -3'
miRNA:   3'- aGGCUa---UGUUGUu---UGC-GCUGGCGU-GC- -5'
5500 5' -50.6 NC_001798.1 + 145387 0.72 0.904491
Target:  5'- cCCGAgggGCGACGcggggaaAGCGCGcccccgcccggccGCCGCGCGc -3'
miRNA:   3'- aGGCUa--UGUUGU-------UUGCGC-------------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 142975 0.67 0.991947
Target:  5'- aUCCGAggaccGCGuguaauACuuGCGCGGCUuGCGCGa -3'
miRNA:   3'- -AGGCUa----UGU------UGuuUGCGCUGG-CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 141579 0.68 0.978447
Target:  5'- gCUGcgGCGGCGGcACGCGACgGC-CGg -3'
miRNA:   3'- aGGCuaUGUUGUU-UGCGCUGgCGuGC- -5'
5500 5' -50.6 NC_001798.1 + 141457 0.66 0.995505
Target:  5'- uUCCGggGCuGCGAGCuGCugaccggcucGCCGCGCGg -3'
miRNA:   3'- -AGGCuaUGuUGUUUG-CGc---------UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 139032 0.67 0.989476
Target:  5'- uUCCGGUACcuGCGAAC-CaGCCGCuGCGg -3'
miRNA:   3'- -AGGCUAUGu-UGUUUGcGcUGGCG-UGC- -5'
5500 5' -50.6 NC_001798.1 + 138163 0.66 0.997228
Target:  5'- cCCGGguccuGgGGGCGCGACC-CGCGg -3'
miRNA:   3'- aGGCUaugu-UgUUUGCGCUGGcGUGC- -5'
5500 5' -50.6 NC_001798.1 + 137777 0.69 0.967393
Target:  5'- cCCaGAggcGCGACAGGCGCucgagguccuGGCCGUACGc -3'
miRNA:   3'- aGG-CUa--UGUUGUUUGCG----------CUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 137620 0.68 0.98645
Target:  5'- gCCGGU--GAUGAGCGCGcCCGCuCGg -3'
miRNA:   3'- aGGCUAugUUGUUUGCGCuGGCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.