miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 152506 0.66 0.786326
Target:  5'- --------aGCCGCGCGCCCCG-GCg -3'
miRNA:   3'- aaccaacagCGGUGUGCGGGGCaCGg -5'
5501 3' -58.9 NC_001798.1 + 150472 0.67 0.739634
Target:  5'- -cGGggGcgCGCgGCGCGCCCCGacgacUGUg -3'
miRNA:   3'- aaCCaaCa-GCGgUGUGCGGGGC-----ACGg -5'
5501 3' -58.9 NC_001798.1 + 149249 0.67 0.729988
Target:  5'- -gGGgcGUCGCCggccggcgcggGCGCGCCCUGcucCCg -3'
miRNA:   3'- aaCCaaCAGCGG-----------UGUGCGGGGCac-GG- -5'
5501 3' -58.9 NC_001798.1 + 147723 0.68 0.660652
Target:  5'- -aGGcagGUCaGCCGCAcCGCCCgCGaGCCa -3'
miRNA:   3'- aaCCaa-CAG-CGGUGU-GCGGG-GCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 147032 0.69 0.620353
Target:  5'- -gGGcUUGgcCGCCGagguGCGCCCCG-GCCg -3'
miRNA:   3'- aaCC-AACa-GCGGUg---UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 145530 0.67 0.729988
Target:  5'- -------nCGCCGCGCGCCCCcgcccgGCCg -3'
miRNA:   3'- aaccaacaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 145506 0.69 0.580189
Target:  5'- -cGGc---CGCCGCGCGCCCCcgcccgGCCg -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 145464 0.69 0.580189
Target:  5'- -cGGc---CGCCGCGCGCCCCcgcccgGCCg -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 145422 0.69 0.580189
Target:  5'- -cGGc---CGCCGCGCGCCCCcgcccgGCCg -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 143874 0.7 0.570222
Target:  5'- cUUGGagUGggaCGCCGC-CGCCCCGcGCUu -3'
miRNA:   3'- -AACCa-ACa--GCGGUGuGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 134949 0.69 0.590193
Target:  5'- cUGGUgcgGggCGCCGCggccacccAUGCCgCGUGCCu -3'
miRNA:   3'- aACCAa--Ca-GCGGUG--------UGCGGgGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 134417 0.66 0.786326
Target:  5'- -aGGUcgacGUCGacCCGCugGCCCUGU-CCg -3'
miRNA:   3'- aaCCAa---CAGC--GGUGugCGGGGCAcGG- -5'
5501 3' -58.9 NC_001798.1 + 134174 0.66 0.795295
Target:  5'- -cGGccgcccgCGCCGCGacgGCCCCG-GCCg -3'
miRNA:   3'- aaCCaaca---GCGGUGUg--CGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 125745 0.67 0.720259
Target:  5'- -----cGcCGCCACGCgGCCCUGcGCCg -3'
miRNA:   3'- aaccaaCaGCGGUGUG-CGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 124155 0.69 0.610281
Target:  5'- -aGGccUGUCcCUGCGuCGCCCCGUGCa -3'
miRNA:   3'- aaCCa-ACAGcGGUGU-GCGGGGCACGg -5'
5501 3' -58.9 NC_001798.1 + 124084 0.66 0.804121
Target:  5'- -aGGcgG-CGCC-UGCGCCCCGacgGCCc -3'
miRNA:   3'- aaCCaaCaGCGGuGUGCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 122709 0.66 0.804121
Target:  5'- -aGGUga-CGCgGCGCuuCCCCGUGCUc -3'
miRNA:   3'- aaCCAacaGCGgUGUGc-GGGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 122514 0.76 0.245843
Target:  5'- -aGGgaccccUG-CGCCACccGCGCCCCGUGCUg -3'
miRNA:   3'- aaCCa-----ACaGCGGUG--UGCGGGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 121261 0.68 0.680699
Target:  5'- -cGGggGUC-CCGCugucCGCCCuCGUGCg -3'
miRNA:   3'- aaCCaaCAGcGGUGu---GCGGG-GCACGg -5'
5501 3' -58.9 NC_001798.1 + 116847 0.66 0.786326
Target:  5'- -cGGgg--CGCUGCACGCCggCGUGCUg -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGg-GCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.