miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 1492 0.67 0.710457
Target:  5'- aUGGc-GUCGCC-CGCGCCCgaggCGgcgGCCc -3'
miRNA:   3'- aACCaaCAGCGGuGUGCGGG----GCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 2606 0.67 0.720259
Target:  5'- -cGGggGgcgcggggCGCCGCccggcgGCGCCCUG-GCCg -3'
miRNA:   3'- aaCCaaCa-------GCGGUG------UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 3368 0.74 0.342087
Target:  5'- -cGGUUggcGUCGCCGCcgucgucggggguucGCGCCCCGgucagcGCCg -3'
miRNA:   3'- aaCCAA---CAGCGGUG---------------UGCGGGGCa-----CGG- -5'
5501 3' -58.9 NC_001798.1 + 3857 0.68 0.66467
Target:  5'- -cGGcUGUCGcCCagcccgccguacagcACGCGCCCCGggggcgggggGCCg -3'
miRNA:   3'- aaCCaACAGC-GG---------------UGUGCGGGGCa---------CGG- -5'
5501 3' -58.9 NC_001798.1 + 5299 0.67 0.739634
Target:  5'- -----cGaCGCCGcCGCGCCCCGgcucGCCg -3'
miRNA:   3'- aaccaaCaGCGGU-GUGCGGGGCa---CGG- -5'
5501 3' -58.9 NC_001798.1 + 12393 0.7 0.530835
Target:  5'- -cGGUgcgCGCCcCACGCuCCCG-GCCu -3'
miRNA:   3'- aaCCAacaGCGGuGUGCG-GGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 12981 0.67 0.699601
Target:  5'- -gGGUagcaucccgaugcUGUCGaCCGuCACGCCCUGUugguagGCCu -3'
miRNA:   3'- aaCCA-------------ACAGC-GGU-GUGCGGGGCA------CGG- -5'
5501 3' -58.9 NC_001798.1 + 14796 0.67 0.710457
Target:  5'- -gGGUgcgcguaUCGCC-UGCGCCCCGcccgGCCg -3'
miRNA:   3'- aaCCAac-----AGCGGuGUGCGGGGCa---CGG- -5'
5501 3' -58.9 NC_001798.1 + 20974 0.66 0.785421
Target:  5'- -gGGaUGUCuGCCAUaguggcaACGCCuuGUcGCCa -3'
miRNA:   3'- aaCCaACAG-CGGUG-------UGCGGggCA-CGG- -5'
5501 3' -58.9 NC_001798.1 + 23280 0.69 0.610281
Target:  5'- aUGGccagccUGUCGCCGCgacccccgGCGCCCC--GCCg -3'
miRNA:   3'- aACCa-----ACAGCGGUG--------UGCGGGGcaCGG- -5'
5501 3' -58.9 NC_001798.1 + 24391 0.71 0.511509
Target:  5'- -----cGcCGCCGC-CGCCCCGUuGCCg -3'
miRNA:   3'- aaccaaCaGCGGUGuGCGGGGCA-CGG- -5'
5501 3' -58.9 NC_001798.1 + 25087 0.69 0.600226
Target:  5'- -aGGg---CGCCGCcgggcgGCGCCCCGcGCCc -3'
miRNA:   3'- aaCCaacaGCGGUG------UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 25479 0.66 0.804121
Target:  5'- -cGGcc--CGCUGCGCGCCUCGgGCCc -3'
miRNA:   3'- aaCCaacaGCGGUGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 27939 0.67 0.720259
Target:  5'- -gGGUcccggCGCCGgcCGCGCCCCGgcgcuccagccgUGCCg -3'
miRNA:   3'- aaCCAaca--GCGGU--GUGCGGGGC------------ACGG- -5'
5501 3' -58.9 NC_001798.1 + 28199 0.67 0.710457
Target:  5'- -cGGggGgaaggCGCCGgAgGCCCCGcacGCCg -3'
miRNA:   3'- aaCCaaCa----GCGGUgUgCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 30196 0.76 0.276456
Target:  5'- -cGGggGUccCGCCuCACGCCCCGcGCCc -3'
miRNA:   3'- aaCCaaCA--GCGGuGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 30862 0.68 0.680699
Target:  5'- -cGGUccgcgcccUGUCGCC-CACccCCCCGUGgCCc -3'
miRNA:   3'- aaCCA--------ACAGCGGuGUGc-GGGGCAC-GG- -5'
5501 3' -58.9 NC_001798.1 + 31571 0.74 0.331636
Target:  5'- -gGGgcG-CGCCGCGCGCCCCcgcgcgGCCg -3'
miRNA:   3'- aaCCaaCaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 31693 0.68 0.680699
Target:  5'- -cGGUggacgCGCacCGCGCGCCCCG-GUCg -3'
miRNA:   3'- aaCCAaca--GCG--GUGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 33518 0.66 0.795295
Target:  5'- -cGGUUGaaucacaaCGCaUGCACGCCCUcUGCCc -3'
miRNA:   3'- aaCCAACa-------GCG-GUGUGCGGGGcACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.