miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 35397 0.66 0.767992
Target:  5'- gUGGggccgGcCGCCGgAUGCCCgCGgggGCCu -3'
miRNA:   3'- aACCaa---CaGCGGUgUGCGGG-GCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 37890 0.69 0.610281
Target:  5'- -aGGUguUGUaggGCCGCggAUGCCCCGaGCCa -3'
miRNA:   3'- aaCCA--ACAg--CGGUG--UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 40937 0.68 0.647569
Target:  5'- -gGGUgugUGaUCGCgCAgGCGCCCCGggagaugagagcggUGCCg -3'
miRNA:   3'- aaCCA---AC-AGCG-GUgUGCGGGGC--------------ACGG- -5'
5501 3' -58.9 NC_001798.1 + 42570 0.67 0.710457
Target:  5'- cUGGgcGUCGCCGCugGUaucugUUCGUGUa -3'
miRNA:   3'- aACCaaCAGCGGUGugCG-----GGGCACGg -5'
5501 3' -58.9 NC_001798.1 + 42853 0.67 0.729988
Target:  5'- -------cCGCCGCcaGCGCCCCGcGCCu -3'
miRNA:   3'- aaccaacaGCGGUG--UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 46429 0.68 0.65059
Target:  5'- -cGGcgGUCGCga-GCGCCCCGU-CCa -3'
miRNA:   3'- aaCCaaCAGCGgugUGCGGGGCAcGG- -5'
5501 3' -58.9 NC_001798.1 + 47233 0.67 0.739634
Target:  5'- gUGGgcgUGUCGUUGgGCGgcCCCCG-GCCu -3'
miRNA:   3'- aACCa--ACAGCGGUgUGC--GGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 48972 0.73 0.402881
Target:  5'- -gGGUU-UCGCCAC-CGCCCCccagGCCa -3'
miRNA:   3'- aaCCAAcAGCGGUGuGCGGGGca--CGG- -5'
5501 3' -58.9 NC_001798.1 + 51931 0.66 0.804121
Target:  5'- gUGGggGcCGCCGC-CGUgCCGcUGCUc -3'
miRNA:   3'- aACCaaCaGCGGUGuGCGgGGC-ACGG- -5'
5501 3' -58.9 NC_001798.1 + 52520 0.68 0.690668
Target:  5'- -cGGcg---GCCGCGCGCgCCGUGCUg -3'
miRNA:   3'- aaCCaacagCGGUGUGCGgGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 53834 0.66 0.767992
Target:  5'- ----gUGUCGCCGCcuGgGCCCCGccgaucGCCg -3'
miRNA:   3'- aaccaACAGCGGUG--UgCGGGGCa-----CGG- -5'
5501 3' -58.9 NC_001798.1 + 54289 0.66 0.795295
Target:  5'- cUGGUUcgggGcCGCC-CugGCCCCGgaccUGCUu -3'
miRNA:   3'- aACCAA----CaGCGGuGugCGGGGC----ACGG- -5'
5501 3' -58.9 NC_001798.1 + 58662 0.68 0.67069
Target:  5'- -cGGUUGUcccgaggccCGCCACcacCGCCgCCGUcaggGCCg -3'
miRNA:   3'- aaCCAACA---------GCGGUGu--GCGG-GGCA----CGG- -5'
5501 3' -58.9 NC_001798.1 + 62567 0.75 0.316403
Target:  5'- -cGGacGUCGCCGCcacgucauccacgACGCCCCGgagGCCc -3'
miRNA:   3'- aaCCaaCAGCGGUG-------------UGCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 69203 0.69 0.589191
Target:  5'- -cGGUgggGU-GCCGCagggccaaaaggaGCGCCCCG-GCCg -3'
miRNA:   3'- aaCCAa--CAgCGGUG-------------UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 72503 0.67 0.720259
Target:  5'- cUGGgg--C-CCugGCGCCCCGagGCCa -3'
miRNA:   3'- aACCaacaGcGGugUGCGGGGCa-CGG- -5'
5501 3' -58.9 NC_001798.1 + 74589 0.69 0.630434
Target:  5'- -cGGUcGUCcCCGCGCuCCCCGcGCCc -3'
miRNA:   3'- aaCCAaCAGcGGUGUGcGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 76000 0.67 0.720259
Target:  5'- -cGGg---CGCCGgcggcaGgGCCCCGUGCCc -3'
miRNA:   3'- aaCCaacaGCGGUg-----UgCGGGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 76722 0.66 0.795295
Target:  5'- -cGGgaGcgCGCC-CACGCCCUGgagGCg -3'
miRNA:   3'- aaCCaaCa-GCGGuGUGCGGGGCa--CGg -5'
5501 3' -58.9 NC_001798.1 + 77616 0.66 0.804121
Target:  5'- -aGGUcaucggCGCCACGCGaCgCCGcGCCg -3'
miRNA:   3'- aaCCAaca---GCGGUGUGC-GgGGCaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.