miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 124155 0.69 0.610281
Target:  5'- -aGGccUGUCcCUGCGuCGCCCCGUGCa -3'
miRNA:   3'- aaCCa-ACAGcGGUGU-GCGGGGCACGg -5'
5501 3' -58.9 NC_001798.1 + 23280 0.69 0.610281
Target:  5'- aUGGccagccUGUCGCCGCgacccccgGCGCCCC--GCCg -3'
miRNA:   3'- aACCa-----ACAGCGGUG--------UGCGGGGcaCGG- -5'
5501 3' -58.9 NC_001798.1 + 147032 0.69 0.620353
Target:  5'- -gGGcUUGgcCGCCGagguGCGCCCCG-GCCg -3'
miRNA:   3'- aaCC-AACa-GCGGUg---UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 74589 0.69 0.630434
Target:  5'- -cGGUcGUCcCCGCGCuCCCCGcGCCc -3'
miRNA:   3'- aaCCAaCAGcGGUGUGcGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 99222 0.68 0.640515
Target:  5'- -cGGcgaagGUCGCCACGCGCa-CGaGCCg -3'
miRNA:   3'- aaCCaa---CAGCGGUGUGCGggGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 40937 0.68 0.647569
Target:  5'- -gGGUgugUGaUCGCgCAgGCGCCCCGggagaugagagcggUGCCg -3'
miRNA:   3'- aaCCA---AC-AGCG-GUgUGCGGGGC--------------ACGG- -5'
5501 3' -58.9 NC_001798.1 + 92574 0.68 0.65059
Target:  5'- uUUGGcu-UCGCggacUACGCGCCCCG-GCCc -3'
miRNA:   3'- -AACCaacAGCG----GUGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 46429 0.68 0.65059
Target:  5'- -cGGcgGUCGCga-GCGCCCCGU-CCa -3'
miRNA:   3'- aaCCaaCAGCGgugUGCGGGGCAcGG- -5'
5501 3' -58.9 NC_001798.1 + 147723 0.68 0.660652
Target:  5'- -aGGcagGUCaGCCGCAcCGCCCgCGaGCCa -3'
miRNA:   3'- aaCCaa-CAG-CGGUGU-GCGGG-GCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 3857 0.68 0.66467
Target:  5'- -cGGcUGUCGcCCagcccgccguacagcACGCGCCCCGggggcgggggGCCg -3'
miRNA:   3'- aaCCaACAGC-GG---------------UGUGCGGGGCa---------CGG- -5'
5501 3' -58.9 NC_001798.1 + 58662 0.68 0.67069
Target:  5'- -cGGUUGUcccgaggccCGCCACcacCGCCgCCGUcaggGCCg -3'
miRNA:   3'- aaCCAACA---------GCGGUGu--GCGG-GGCA----CGG- -5'
5501 3' -58.9 NC_001798.1 + 30862 0.68 0.680699
Target:  5'- -cGGUccgcgcccUGUCGCC-CACccCCCCGUGgCCc -3'
miRNA:   3'- aaCCA--------ACAGCGGuGUGc-GGGGCAC-GG- -5'
5501 3' -58.9 NC_001798.1 + 93299 0.68 0.680699
Target:  5'- cUGGcgcgCGCCGCGgGCCUCGUgggcGCCa -3'
miRNA:   3'- aACCaacaGCGGUGUgCGGGGCA----CGG- -5'
5501 3' -58.9 NC_001798.1 + 121261 0.68 0.680699
Target:  5'- -cGGggGUC-CCGCugucCGCCCuCGUGCg -3'
miRNA:   3'- aaCCaaCAGcGGUGu---GCGGG-GCACGg -5'
5501 3' -58.9 NC_001798.1 + 115521 0.68 0.680699
Target:  5'- -gGGgcGUaCGUCGCG-GCCCCG-GCCg -3'
miRNA:   3'- aaCCaaCA-GCGGUGUgCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 83909 0.68 0.680699
Target:  5'- gUGGUgcgccGcCGCCACcaccacCGCCCCGUaGUCa -3'
miRNA:   3'- aACCAa----CaGCGGUGu-----GCGGGGCA-CGG- -5'
5501 3' -58.9 NC_001798.1 + 31693 0.68 0.680699
Target:  5'- -cGGUggacgCGCacCGCGCGCCCCG-GUCg -3'
miRNA:   3'- aaCCAaca--GCG--GUGUGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 52520 0.68 0.690668
Target:  5'- -cGGcg---GCCGCGCGCgCCGUGCUg -3'
miRNA:   3'- aaCCaacagCGGUGUGCGgGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 12981 0.67 0.699601
Target:  5'- -gGGUagcaucccgaugcUGUCGaCCGuCACGCCCUGUugguagGCCu -3'
miRNA:   3'- aaCCA-------------ACAGC-GGU-GUGCGGGGCA------CGG- -5'
5501 3' -58.9 NC_001798.1 + 96157 0.67 0.709473
Target:  5'- -gGGUgacUCGCCAuggcggcCGCGcCCCCG-GCCg -3'
miRNA:   3'- aaCCAac-AGCGGU-------GUGC-GGGGCaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.