miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 3' -58.9 NC_001798.1 + 85040 0.66 0.767992
Target:  5'- -cGGgggUGcCGUCGaGCGCCgCCGUGCg -3'
miRNA:   3'- aaCCa--ACaGCGGUgUGCGG-GGCACGg -5'
5501 3' -58.9 NC_001798.1 + 35397 0.66 0.767992
Target:  5'- gUGGggccgGcCGCCGgAUGCCCgCGgggGCCu -3'
miRNA:   3'- aACCaa---CaGCGGUgUGCGGG-GCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 102515 0.66 0.758645
Target:  5'- -cGGggUGUCcguagGCCAC-CGuCCCCGcgGCCg -3'
miRNA:   3'- aaCCa-ACAG-----CGGUGuGC-GGGGCa-CGG- -5'
5501 3' -58.9 NC_001798.1 + 150472 0.67 0.739634
Target:  5'- -cGGggGcgCGCgGCGCGCCCCGacgacUGUg -3'
miRNA:   3'- aaCCaaCa-GCGgUGUGCGGGGC-----ACGg -5'
5501 3' -58.9 NC_001798.1 + 47233 0.67 0.739634
Target:  5'- gUGGgcgUGUCGUUGgGCGgcCCCCG-GCCu -3'
miRNA:   3'- aACCa--ACAGCGGUgUGC--GGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 5299 0.67 0.739634
Target:  5'- -----cGaCGCCGcCGCGCCCCGgcucGCCg -3'
miRNA:   3'- aaccaaCaGCGGU-GUGCGGGGCa---CGG- -5'
5501 3' -58.9 NC_001798.1 + 145530 0.67 0.729988
Target:  5'- -------nCGCCGCGCGCCCCcgcccgGCCg -3'
miRNA:   3'- aaccaacaGCGGUGUGCGGGGca----CGG- -5'
5501 3' -58.9 NC_001798.1 + 42853 0.67 0.729988
Target:  5'- -------cCGCCGCcaGCGCCCCGcGCCu -3'
miRNA:   3'- aaccaacaGCGGUG--UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 149249 0.67 0.729988
Target:  5'- -gGGgcGUCGCCggccggcgcggGCGCGCCCUGcucCCg -3'
miRNA:   3'- aaCCaaCAGCGG-----------UGUGCGGGGCac-GG- -5'
5501 3' -58.9 NC_001798.1 + 2606 0.67 0.720259
Target:  5'- -cGGggGgcgcggggCGCCGCccggcgGCGCCCUG-GCCg -3'
miRNA:   3'- aaCCaaCa-------GCGGUG------UGCGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 27939 0.67 0.720259
Target:  5'- -gGGUcccggCGCCGgcCGCGCCCCGgcgcuccagccgUGCCg -3'
miRNA:   3'- aaCCAaca--GCGGU--GUGCGGGGC------------ACGG- -5'
5501 3' -58.9 NC_001798.1 + 72503 0.67 0.720259
Target:  5'- cUGGgg--C-CCugGCGCCCCGagGCCa -3'
miRNA:   3'- aACCaacaGcGGugUGCGGGGCa-CGG- -5'
5501 3' -58.9 NC_001798.1 + 76000 0.67 0.720259
Target:  5'- -cGGg---CGCCGgcggcaGgGCCCCGUGCCc -3'
miRNA:   3'- aaCCaacaGCGGUg-----UgCGGGGCACGG- -5'
5501 3' -58.9 NC_001798.1 + 90403 0.67 0.720259
Target:  5'- -cGGUUGg-GCCgGCGCGuUCCCGcgGCCg -3'
miRNA:   3'- aaCCAACagCGG-UGUGC-GGGGCa-CGG- -5'
5501 3' -58.9 NC_001798.1 + 125745 0.67 0.720259
Target:  5'- -----cGcCGCCACGCgGCCCUGcGCCg -3'
miRNA:   3'- aaccaaCaGCGGUGUG-CGGGGCaCGG- -5'
5501 3' -58.9 NC_001798.1 + 95112 0.67 0.710457
Target:  5'- -cGGcccgUGaUgGCCGCGCGCCCgaugguCGUGCUg -3'
miRNA:   3'- aaCCa---AC-AgCGGUGUGCGGG------GCACGG- -5'
5501 3' -58.9 NC_001798.1 + 28199 0.67 0.710457
Target:  5'- -cGGggGgaaggCGCCGgAgGCCCCGcacGCCg -3'
miRNA:   3'- aaCCaaCa----GCGGUgUgCGGGGCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 1492 0.67 0.710457
Target:  5'- aUGGc-GUCGCC-CGCGCCCgaggCGgcgGCCc -3'
miRNA:   3'- aACCaaCAGCGGuGUGCGGG----GCa--CGG- -5'
5501 3' -58.9 NC_001798.1 + 14796 0.67 0.710457
Target:  5'- -gGGUgcgcguaUCGCC-UGCGCCCCGcccgGCCg -3'
miRNA:   3'- aaCCAac-----AGCGGuGUGCGGGGCa---CGG- -5'
5501 3' -58.9 NC_001798.1 + 104650 0.67 0.710457
Target:  5'- gUGG--GUgGCCAgG-GCCCCGUGCUc -3'
miRNA:   3'- aACCaaCAgCGGUgUgCGGGGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.