miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 74864 0.69 0.989283
Target:  5'- uGGAGGugGggGcAGUgCCGGUgGGUCgCCa -3'
miRNA:   3'- -CUUCCugCuuUaUUA-GGCCG-CUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 55995 0.69 0.989283
Target:  5'- cGGGGGCGAGGgg--CUGGUaggcgGGUCCCg -3'
miRNA:   3'- cUUCCUGCUUUauuaGGCCG-----CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 74565 0.69 0.989283
Target:  5'- gGggGGACGGAGaAGgcucgggcCCGGUcGUCCCc -3'
miRNA:   3'- -CuuCCUGCUUUaUUa-------GGCCGcUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 76063 0.69 0.990622
Target:  5'- uGGAGGACGugcgGAUCCaggcccgccgGGCGAUCg- -3'
miRNA:   3'- -CUUCCUGCuuuaUUAGG----------CCGCUAGgg -5'
5501 5' -48.7 NC_001798.1 + 93369 0.69 0.991595
Target:  5'- --uGGACGAcgccgggCCGGCGGaCCCc -3'
miRNA:   3'- cuuCCUGCUuuauua-GGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 23053 0.69 0.992903
Target:  5'- --uGGACGAGGccGUUCGcaCGAUCCCg -3'
miRNA:   3'- cuuCCUGCUUUauUAGGCc-GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 66696 0.69 0.991825
Target:  5'- aGggGGACuGGGUAG-CCGGgGuccguUCCCa -3'
miRNA:   3'- -CuuCCUGcUUUAUUaGGCCgCu----AGGG- -5'
5501 5' -48.7 NC_001798.1 + 128867 0.69 0.990622
Target:  5'- cGAGGACcuGAUGG-CgCGGCGAUCgCCg -3'
miRNA:   3'- cUUCCUGcuUUAUUaG-GCCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 106070 0.69 0.992903
Target:  5'- aGggGGGCcuuugcGGUCUGGCGGUCgCg -3'
miRNA:   3'- -CuuCCUGcuuua-UUAGGCCGCUAGgG- -5'
5501 5' -48.7 NC_001798.1 + 152521 0.69 0.992903
Target:  5'- cGGGGGCGGAGggagggAAUCCcccccucucggGGCGGcCCCg -3'
miRNA:   3'- cUUCCUGCUUUa-----UUAGG-----------CCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 38303 0.69 0.990622
Target:  5'- gGggGGGCGAcgugGGUGauGUCCGG-GG-CCCg -3'
miRNA:   3'- -CuuCCUGCU----UUAU--UAGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 9172 0.68 0.993864
Target:  5'- cGggGGGCaGGGUc-UCUGGCgGGUCCCc -3'
miRNA:   3'- -CuuCCUGcUUUAuuAGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 56444 0.68 0.995473
Target:  5'- -uAGGAcCGGAAUuccGUCCGG-GuAUCCCg -3'
miRNA:   3'- cuUCCU-GCUUUAu--UAGGCCgC-UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 15190 0.68 0.993864
Target:  5'- gGggGGugGggGgg--CUGGCGAgCCg -3'
miRNA:   3'- -CuuCCugCuuUauuaGGCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 27024 0.68 0.995473
Target:  5'- gGgcGGGCGggG--GUCgGGCGGgcggcacgucUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUauUAGgCCGCU----------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 52196 0.68 0.995473
Target:  5'- --uGGACGug-----CUGGCGGUCCUg -3'
miRNA:   3'- cuuCCUGCuuuauuaGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 120393 0.68 0.994718
Target:  5'- --cGGGCGAu---GUCCgcgggGGcCGAUCCCg -3'
miRNA:   3'- cuuCCUGCUuuauUAGG-----CC-GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 95689 0.68 0.994718
Target:  5'- -cGGcGGCGggGgcggCCGGCGucgCCCg -3'
miRNA:   3'- cuUC-CUGCuuUauuaGGCCGCua-GGG- -5'
5501 5' -48.7 NC_001798.1 + 79509 0.68 0.994718
Target:  5'- -cGGGGCGAGgcGUAucugcgcgCCGGCGGagaCCCg -3'
miRNA:   3'- cuUCCUGCUU--UAUua------GGCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 7194 0.68 0.995473
Target:  5'- cGggGcGGCGAccAUGAUCCGGCGGc--- -3'
miRNA:   3'- -CuuC-CUGCUu-UAUUAGGCCGCUaggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.