miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 56444 0.68 0.995473
Target:  5'- -uAGGAcCGGAAUuccGUCCGG-GuAUCCCg -3'
miRNA:   3'- cuUCCU-GCUUUAu--UAGGCCgC-UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 7194 0.68 0.995473
Target:  5'- cGggGcGGCGAccAUGAUCCGGCGGc--- -3'
miRNA:   3'- -CuuC-CUGCUu-UAUUAGGCCGCUaggg -5'
5501 5' -48.7 NC_001798.1 + 122233 0.68 0.996137
Target:  5'- -cGGGugGGAAgcucuggCCGGCGGcgaccggCCCg -3'
miRNA:   3'- cuUCCugCUUUauua---GGCCGCUa------GGG- -5'
5501 5' -48.7 NC_001798.1 + 65742 0.68 0.996137
Target:  5'- cAGGGcCGgcAUGAUgCUGGCGGUgCCg -3'
miRNA:   3'- cUUCCuGCuuUAUUA-GGCCGCUAgGG- -5'
5501 5' -48.7 NC_001798.1 + 127949 0.68 0.996137
Target:  5'- --cGGGCGAAAaGGcCCGGCccgcGUCCCc -3'
miRNA:   3'- cuuCCUGCUUUaUUaGGCCGc---UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 14995 0.68 0.99672
Target:  5'- gGggGGGCGAGGcguGUUgggGGCGAgcggCCCa -3'
miRNA:   3'- -CuuCCUGCUUUau-UAGg--CCGCUa---GGG- -5'
5501 5' -48.7 NC_001798.1 + 65941 0.68 0.99672
Target:  5'- cGggGGugGAcggcacGAUCUGGUGGUCg- -3'
miRNA:   3'- -CuuCCugCUuua---UUAGGCCGCUAGgg -5'
5501 5' -48.7 NC_001798.1 + 127511 0.68 0.99672
Target:  5'- cGGAGGGC------AUCCGGCGccaccuucgcaAUCCCa -3'
miRNA:   3'- -CUUCCUGcuuuauUAGGCCGC-----------UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 2606 0.68 0.99672
Target:  5'- cGggGGGCGcgGggcgccgcCCGGCGGcgCCCu -3'
miRNA:   3'- -CuuCCUGCuuUauua----GGCCGCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 4863 0.68 0.99672
Target:  5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3'
miRNA:   3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5'
5501 5' -48.7 NC_001798.1 + 70506 0.68 0.99672
Target:  5'- cAAGGACac---GGUCCuGGCGAUCaCCg -3'
miRNA:   3'- cUUCCUGcuuuaUUAGG-CCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 113821 0.68 0.99672
Target:  5'- cGGGGACaGAGG-AcgCCGGCcGGUCCUc -3'
miRNA:   3'- cUUCCUG-CUUUaUuaGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 59003 0.67 0.997033
Target:  5'- gGggGGcGCGGAGgaaccccaggCCGGUGcUCCCg -3'
miRNA:   3'- -CuuCC-UGCUUUauua------GGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 128075 0.67 0.997228
Target:  5'- --cGGAccccgaccCGAuGUGGUCggcguCGGCGAUCCCc -3'
miRNA:   3'- cuuCCU--------GCUuUAUUAG-----GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 102064 0.67 0.997228
Target:  5'- uGggGGugGugGUAGggccccaCCGGCGGauacggCCCg -3'
miRNA:   3'- -CuuCCugCuuUAUUa------GGCCGCUa-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 57465 0.67 0.997668
Target:  5'- uGggGGGCGggGccGGUuuGGCGGUggaggCCUu -3'
miRNA:   3'- -CuuCCUGCuuUa-UUAggCCGCUA-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 99630 0.67 0.997668
Target:  5'- --uGGACGAGAUGcUCCgcgccgaguacGGCGGcUCCUu -3'
miRNA:   3'- cuuCCUGCUUUAUuAGG-----------CCGCU-AGGG- -5'
5501 5' -48.7 NC_001798.1 + 61173 0.67 0.998049
Target:  5'- gGggGGAagagaGAGAUGGUcggccugcaCCGGCGcgCgCCg -3'
miRNA:   3'- -CuuCCUg----CUUUAUUA---------GGCCGCuaG-GG- -5'
5501 5' -48.7 NC_001798.1 + 85827 0.67 0.998049
Target:  5'- gGggGGGCGggGg---CgGGCGGgggCUCg -3'
miRNA:   3'- -CuuCCUGCuuUauuaGgCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 22776 0.67 0.998493
Target:  5'- cGggGGACGucuccgggccgcggcGGAgacgaCCGGCGGcCCCg -3'
miRNA:   3'- -CuuCCUGC---------------UUUauua-GGCCGCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.