miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 127511 0.68 0.99672
Target:  5'- cGGAGGGC------AUCCGGCGccaccuucgcaAUCCCa -3'
miRNA:   3'- -CUUCCUGcuuuauUAGGCCGC-----------UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 2606 0.68 0.99672
Target:  5'- cGggGGGCGcgGggcgccgcCCGGCGGcgCCCu -3'
miRNA:   3'- -CuuCCUGCuuUauua----GGCCGCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 4863 0.68 0.99672
Target:  5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3'
miRNA:   3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5'
5501 5' -48.7 NC_001798.1 + 70506 0.68 0.99672
Target:  5'- cAAGGACac---GGUCCuGGCGAUCaCCg -3'
miRNA:   3'- cUUCCUGcuuuaUUAGG-CCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 113821 0.68 0.99672
Target:  5'- cGGGGACaGAGG-AcgCCGGCcGGUCCUc -3'
miRNA:   3'- cUUCCUG-CUUUaUuaGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 65742 0.68 0.996137
Target:  5'- cAGGGcCGgcAUGAUgCUGGCGGUgCCg -3'
miRNA:   3'- cUUCCuGCuuUAUUA-GGCCGCUAgGG- -5'
5501 5' -48.7 NC_001798.1 + 122233 0.68 0.996137
Target:  5'- -cGGGugGGAAgcucuggCCGGCGGcgaccggCCCg -3'
miRNA:   3'- cuUCCugCUUUauua---GGCCGCUa------GGG- -5'
5501 5' -48.7 NC_001798.1 + 127949 0.68 0.996137
Target:  5'- --cGGGCGAAAaGGcCCGGCccgcGUCCCc -3'
miRNA:   3'- cuuCCUGCUUUaUUaGGCCGc---UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 16755 0.68 0.995473
Target:  5'- gGggGGAUuAAuUGGUCCGGgGAcaCCCg -3'
miRNA:   3'- -CuuCCUGcUUuAUUAGGCCgCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 7194 0.68 0.995473
Target:  5'- cGggGcGGCGAccAUGAUCCGGCGGc--- -3'
miRNA:   3'- -CuuC-CUGCUu-UAUUAGGCCGCUaggg -5'
5501 5' -48.7 NC_001798.1 + 56444 0.68 0.995473
Target:  5'- -uAGGAcCGGAAUuccGUCCGG-GuAUCCCg -3'
miRNA:   3'- cuUCCU-GCUUUAu--UAGGCCgC-UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 52196 0.68 0.995473
Target:  5'- --uGGACGug-----CUGGCGGUCCUg -3'
miRNA:   3'- cuuCCUGCuuuauuaGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 27024 0.68 0.995473
Target:  5'- gGgcGGGCGggG--GUCgGGCGGgcggcacgucUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUauUAGgCCGCU----------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 79509 0.68 0.994718
Target:  5'- -cGGGGCGAGgcGUAucugcgcgCCGGCGGagaCCCg -3'
miRNA:   3'- cuUCCUGCUU--UAUua------GGCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 86645 0.68 0.994718
Target:  5'- cGAGGGGCGGGucuguAUAGcCCuGCGggCCCu -3'
miRNA:   3'- -CUUCCUGCUU-----UAUUaGGcCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 120393 0.68 0.994718
Target:  5'- --cGGGCGAu---GUCCgcgggGGcCGAUCCCg -3'
miRNA:   3'- cuuCCUGCUuuauUAGG-----CC-GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 95689 0.68 0.994718
Target:  5'- -cGGcGGCGggGgcggCCGGCGucgCCCg -3'
miRNA:   3'- cuUC-CUGCuuUauuaGGCCGCua-GGG- -5'
5501 5' -48.7 NC_001798.1 + 15190 0.68 0.993864
Target:  5'- gGggGGugGggGgg--CUGGCGAgCCg -3'
miRNA:   3'- -CuuCCugCuuUauuaGGCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 9172 0.68 0.993864
Target:  5'- cGggGGGCaGGGUc-UCUGGCgGGUCCCc -3'
miRNA:   3'- -CuuCCUGcUUUAuuAGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 152521 0.69 0.992903
Target:  5'- cGGGGGCGGAGggagggAAUCCcccccucucggGGCGGcCCCg -3'
miRNA:   3'- cUUCCUGCUUUa-----UUAGG-----------CCGCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.