miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 17670 0.66 0.998893
Target:  5'- gGAGGGguaggaucGCGggGUGGUUCaGGCG-UCUCa -3'
miRNA:   3'- -CUUCC--------UGCuuUAUUAGG-CCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 81428 0.66 0.998893
Target:  5'- uGGAGGAgcuggcgucCGAcg-AcgCCGGCGGcCCCa -3'
miRNA:   3'- -CUUCCU---------GCUuuaUuaGGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 97535 0.66 0.998893
Target:  5'- gGggGGGCGGAGgcguggCgCGGgGAcgCCCg -3'
miRNA:   3'- -CuuCCUGCUUUauua--G-GCCgCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 149400 0.66 0.998893
Target:  5'- cGggGGGCGucgGGUAGUCgGGgGGcCUCa -3'
miRNA:   3'- -CuuCCUGCu--UUAUUAGgCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 147133 0.66 0.998849
Target:  5'- cGGAGGcuuuuuuCGAuucccggCCGGgGGUCCCg -3'
miRNA:   3'- -CUUCCu------GCUuuauua-GGCCgCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 2575 0.67 0.998656
Target:  5'- -cGGGGCGggGggcGUCCGcGCGG-CUCu -3'
miRNA:   3'- cuUCCUGCuuUau-UAGGC-CGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 59860 0.67 0.998656
Target:  5'- cGGAGGAgGAGuccuggcuGUGGUCgGGCcggCCCg -3'
miRNA:   3'- -CUUCCUgCUU--------UAUUAGgCCGcuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 105743 0.67 0.998656
Target:  5'- -cGGGugGGugucg-CCGGCGAcaaaugagUCCCc -3'
miRNA:   3'- cuUCCugCUuuauuaGGCCGCU--------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 131377 0.67 0.998656
Target:  5'- cGggGGAuccccUGggGgc--CCGGCG-UCCCa -3'
miRNA:   3'- -CuuCCU-----GCuuUauuaGGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 153968 0.67 0.998656
Target:  5'- cGAGGACGcgg----CCGGCGcgCUCu -3'
miRNA:   3'- cUUCCUGCuuuauuaGGCCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 22776 0.67 0.998493
Target:  5'- cGggGGACGucuccgggccgcggcGGAgacgaCCGGCGGcCCCg -3'
miRNA:   3'- -CuuCCUGC---------------UUUauua-GGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 61173 0.67 0.998049
Target:  5'- gGggGGAagagaGAGAUGGUcggccugcaCCGGCGcgCgCCg -3'
miRNA:   3'- -CuuCCUg----CUUUAUUA---------GGCCGCuaG-GG- -5'
5501 5' -48.7 NC_001798.1 + 85827 0.67 0.998049
Target:  5'- gGggGGGCGggGg---CgGGCGGgggCUCg -3'
miRNA:   3'- -CuuCCUGCuuUauuaGgCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 99630 0.67 0.997668
Target:  5'- --uGGACGAGAUGcUCCgcgccgaguacGGCGGcUCCUu -3'
miRNA:   3'- cuuCCUGCUUUAUuAGG-----------CCGCU-AGGG- -5'
5501 5' -48.7 NC_001798.1 + 57465 0.67 0.997668
Target:  5'- uGggGGGCGggGccGGUuuGGCGGUggaggCCUu -3'
miRNA:   3'- -CuuCCUGCuuUa-UUAggCCGCUA-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 128075 0.67 0.997228
Target:  5'- --cGGAccccgaccCGAuGUGGUCggcguCGGCGAUCCCc -3'
miRNA:   3'- cuuCCU--------GCUuUAUUAG-----GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 102064 0.67 0.997228
Target:  5'- uGggGGugGugGUAGggccccaCCGGCGGauacggCCCg -3'
miRNA:   3'- -CuuCCugCuuUAUUa------GGCCGCUa-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 59003 0.67 0.997033
Target:  5'- gGggGGcGCGGAGgaaccccaggCCGGUGcUCCCg -3'
miRNA:   3'- -CuuCC-UGCUUUauua------GGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 70506 0.68 0.99672
Target:  5'- cAAGGACac---GGUCCuGGCGAUCaCCg -3'
miRNA:   3'- cUUCCUGcuuuaUUAGG-CCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 4863 0.68 0.99672
Target:  5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3'
miRNA:   3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.