Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5501 | 5' | -48.7 | NC_001798.1 | + | 152521 | 0.69 | 0.992903 |
Target: 5'- cGGGGGCGGAGggagggAAUCCcccccucucggGGCGGcCCCg -3' miRNA: 3'- cUUCCUGCUUUa-----UUAGG-----------CCGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 23053 | 0.69 | 0.992903 |
Target: 5'- --uGGACGAGGccGUUCGcaCGAUCCCg -3' miRNA: 3'- cuuCCUGCUUUauUAGGCc-GCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 66696 | 0.69 | 0.991825 |
Target: 5'- aGggGGACuGGGUAG-CCGGgGuccguUCCCa -3' miRNA: 3'- -CuuCCUGcUUUAUUaGGCCgCu----AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 93369 | 0.69 | 0.991595 |
Target: 5'- --uGGACGAcgccgggCCGGCGGaCCCc -3' miRNA: 3'- cuuCCUGCUuuauua-GGCCGCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 76063 | 0.69 | 0.990622 |
Target: 5'- uGGAGGACGugcgGAUCCaggcccgccgGGCGAUCg- -3' miRNA: 3'- -CUUCCUGCuuuaUUAGG----------CCGCUAGgg -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 38303 | 0.69 | 0.990622 |
Target: 5'- gGggGGGCGAcgugGGUGauGUCCGG-GG-CCCg -3' miRNA: 3'- -CuuCCUGCU----UUAU--UAGGCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 128867 | 0.69 | 0.990622 |
Target: 5'- cGAGGACcuGAUGG-CgCGGCGAUCgCCg -3' miRNA: 3'- cUUCCUGcuUUAUUaG-GCCGCUAG-GG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 74565 | 0.69 | 0.989283 |
Target: 5'- gGggGGACGGAGaAGgcucgggcCCGGUcGUCCCc -3' miRNA: 3'- -CuuCCUGCUUUaUUa-------GGCCGcUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 55995 | 0.69 | 0.989283 |
Target: 5'- cGGGGGCGAGGgg--CUGGUaggcgGGUCCCg -3' miRNA: 3'- cUUCCUGCUUUauuaGGCCG-----CUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 74864 | 0.69 | 0.989283 |
Target: 5'- uGGAGGugGggGcAGUgCCGGUgGGUCgCCa -3' miRNA: 3'- -CUUCCugCuuUaUUA-GGCCG-CUAG-GG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 22387 | 0.7 | 0.9878 |
Target: 5'- uGGGGGCGGAAcc--CCGGCGAgCCg -3' miRNA: 3'- cUUCCUGCUUUauuaGGCCGCUaGGg -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 141211 | 0.7 | 0.9878 |
Target: 5'- -cGGGACGggGgc--CCGGaCGAcuUCCCc -3' miRNA: 3'- cuUCCUGCuuUauuaGGCC-GCU--AGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 136003 | 0.7 | 0.986163 |
Target: 5'- cGGGGGCGggG-AGUCgguCGGCG-UCCCc -3' miRNA: 3'- cUUCCUGCuuUaUUAG---GCCGCuAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 41468 | 0.7 | 0.986163 |
Target: 5'- gGggGGGCGG------UCGGCGggCCCa -3' miRNA: 3'- -CuuCCUGCUuuauuaGGCCGCuaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 31261 | 0.7 | 0.986163 |
Target: 5'- cGggGGugGGAucugGGUCUGGgGGcggCCCu -3' miRNA: 3'- -CuuCCugCUUua--UUAGGCCgCUa--GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 18221 | 0.7 | 0.983201 |
Target: 5'- cGggGGACGGugggcgggaagggugGAUGGuuUCCGGgGG-CCCg -3' miRNA: 3'- -CuuCCUGCU---------------UUAUU--AGGCCgCUaGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 48779 | 0.7 | 0.979553 |
Target: 5'- cGGGGACGcacggcacccCCGGCGAUUCCc -3' miRNA: 3'- cUUCCUGCuuuauua---GGCCGCUAGGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 28860 | 0.71 | 0.977892 |
Target: 5'- cGAGGGCGGccucggCCGGCGGagCCCc -3' miRNA: 3'- cUUCCUGCUuuauuaGGCCGCUa-GGG- -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 147184 | 0.71 | 0.966771 |
Target: 5'- --cGGGCGGAAggcgucccccgcCCGGCGGUCCg -3' miRNA: 3'- cuuCCUGCUUUauua--------GGCCGCUAGGg -5' |
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5501 | 5' | -48.7 | NC_001798.1 | + | 95377 | 0.72 | 0.955477 |
Target: 5'- cGGAGGGCGggG-----CGGCGGUCgCCa -3' miRNA: 3'- -CUUCCUGCuuUauuagGCCGCUAG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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