miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 113821 0.68 0.99672
Target:  5'- cGGGGACaGAGG-AcgCCGGCcGGUCCUc -3'
miRNA:   3'- cUUCCUG-CUUUaUuaGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 106070 0.69 0.992903
Target:  5'- aGggGGGCcuuugcGGUCUGGCGGUCgCg -3'
miRNA:   3'- -CuuCCUGcuuua-UUAGGCCGCUAGgG- -5'
5501 5' -48.7 NC_001798.1 + 105743 0.67 0.998656
Target:  5'- -cGGGugGGugucg-CCGGCGAcaaaugagUCCCc -3'
miRNA:   3'- cuUCCugCUuuauuaGGCCGCU--------AGGG- -5'
5501 5' -48.7 NC_001798.1 + 104894 0.66 0.999521
Target:  5'- cGAAGG-CGGAAUAGU--GGCGcuggCCCa -3'
miRNA:   3'- -CUUCCuGCUUUAUUAggCCGCua--GGG- -5'
5501 5' -48.7 NC_001798.1 + 102879 0.87 0.320219
Target:  5'- uGAAGGuACGugu--GUCCGGCGAUCCCg -3'
miRNA:   3'- -CUUCC-UGCuuuauUAGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 102647 0.66 0.999404
Target:  5'- cGGGcGGCGGAGggg-CCGGgGcgCCCg -3'
miRNA:   3'- cUUC-CUGCUUUauuaGGCCgCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 102064 0.67 0.997228
Target:  5'- uGggGGugGugGUAGggccccaCCGGCGGauacggCCCg -3'
miRNA:   3'- -CuuCCugCuuUAUUa------GGCCGCUa-----GGG- -5'
5501 5' -48.7 NC_001798.1 + 102023 0.66 0.999263
Target:  5'- cGGGGuaGCGggGUGGUUgGGCGGgggUCuCCg -3'
miRNA:   3'- cUUCC--UGCuuUAUUAGgCCGCU---AG-GG- -5'
5501 5' -48.7 NC_001798.1 + 99630 0.67 0.997668
Target:  5'- --uGGACGAGAUGcUCCgcgccgaguacGGCGGcUCCUu -3'
miRNA:   3'- cuuCCUGCUUUAUuAGG-----------CCGCU-AGGG- -5'
5501 5' -48.7 NC_001798.1 + 97535 0.66 0.998893
Target:  5'- gGggGGGCGGAGgcguggCgCGGgGAcgCCCg -3'
miRNA:   3'- -CuuCCUGCUUUauua--G-GCCgCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 95689 0.68 0.994718
Target:  5'- -cGGcGGCGggGgcggCCGGCGucgCCCg -3'
miRNA:   3'- cuUC-CUGCuuUauuaGGCCGCua-GGG- -5'
5501 5' -48.7 NC_001798.1 + 95377 0.72 0.955477
Target:  5'- cGGAGGGCGggG-----CGGCGGUCgCCa -3'
miRNA:   3'- -CUUCCUGCuuUauuagGCCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 93369 0.69 0.991595
Target:  5'- --uGGACGAcgccgggCCGGCGGaCCCc -3'
miRNA:   3'- cuuCCUGCUuuauua-GGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 90394 0.76 0.833696
Target:  5'- cGggGGGCGcgGUugggCCGGCGcguUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUAuua-GGCCGCu--AGGG- -5'
5501 5' -48.7 NC_001798.1 + 90076 0.66 0.999521
Target:  5'- -cAGGACGAcggGggCCGGCaGGcCCCu -3'
miRNA:   3'- cuUCCUGCUuuaUuaGGCCG-CUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 86645 0.68 0.994718
Target:  5'- cGAGGGGCGGGucuguAUAGcCCuGCGggCCCu -3'
miRNA:   3'- -CUUCCUGCUU-----UAUUaGGcCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 85827 0.67 0.998049
Target:  5'- gGggGGGCGggGg---CgGGCGGgggCUCg -3'
miRNA:   3'- -CuuCCUGCuuUauuaGgCCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 85287 0.73 0.921155
Target:  5'- gGggGGGCGggGgccggGGUCCGcccGCGG-CCCg -3'
miRNA:   3'- -CuuCCUGCuuUa----UUAGGC---CGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 81428 0.66 0.998893
Target:  5'- uGGAGGAgcuggcgucCGAcg-AcgCCGGCGGcCCCa -3'
miRNA:   3'- -CUUCCU---------GCUuuaUuaGGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 79509 0.68 0.994718
Target:  5'- -cGGGGCGAGgcGUAucugcgcgCCGGCGGagaCCCg -3'
miRNA:   3'- cuUCCUGCUU--UAUua------GGCCGCUa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.