miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 102879 0.87 0.320219
Target:  5'- uGAAGGuACGugu--GUCCGGCGAUCCCg -3'
miRNA:   3'- -CUUCC-UGCuuuauUAGGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 90394 0.76 0.833696
Target:  5'- cGggGGGCGcgGUugggCCGGCGcguUCCCg -3'
miRNA:   3'- -CuuCCUGCuuUAuua-GGCCGCu--AGGG- -5'
5501 5' -48.7 NC_001798.1 + 137030 0.75 0.853859
Target:  5'- uGAGGACGAcgaccgcaaaaccgcGAUAcgUCGGCuGGUCCCc -3'
miRNA:   3'- cUUCCUGCU---------------UUAUuaGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 56513 0.75 0.874285
Target:  5'- cAGGGugGAGcgGAUCgUGGCGGUgCCg -3'
miRNA:   3'- cUUCCugCUUuaUUAG-GCCGCUAgGG- -5'
5501 5' -48.7 NC_001798.1 + 6612 0.74 0.901918
Target:  5'- gGggGGACGggGggacgggCCGGggggacggggcccCGAUCCCa -3'
miRNA:   3'- -CuuCCUGCuuUauua---GGCC-------------GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 17260 0.74 0.902576
Target:  5'- cAAGGACGcgGUGuggaCGGCGGUCUCa -3'
miRNA:   3'- cUUCCUGCuuUAUuag-GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 5925 0.74 0.917624
Target:  5'- cGggGGGCGGGccguuccucgcgcacAUAAagggCCGGCG-UCCCg -3'
miRNA:   3'- -CuuCCUGCUU---------------UAUUa---GGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 85287 0.73 0.921155
Target:  5'- gGggGGGCGggGgccggGGUCCGcccGCGG-CCCg -3'
miRNA:   3'- -CuuCCUGCuuUa----UUAGGC---CGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 17352 0.72 0.951337
Target:  5'- cGGGGGCGuuuguaucGAUGGUgCCuGCGAUCCCg -3'
miRNA:   3'- cUUCCUGCu-------UUAUUA-GGcCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 56214 0.72 0.954261
Target:  5'- cGggGGACGGAAggGGUggaaaagaagacaaCCGGCGGccgggCCCg -3'
miRNA:   3'- -CuuCCUGCUUUa-UUA--------------GGCCGCUa----GGG- -5'
5501 5' -48.7 NC_001798.1 + 95377 0.72 0.955477
Target:  5'- cGGAGGGCGggG-----CGGCGGUCgCCa -3'
miRNA:   3'- -CUUCCUGCuuUauuagGCCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 147184 0.71 0.966771
Target:  5'- --cGGGCGGAAggcgucccccgcCCGGCGGUCCg -3'
miRNA:   3'- cuuCCUGCUUUauua--------GGCCGCUAGGg -5'
5501 5' -48.7 NC_001798.1 + 28860 0.71 0.977892
Target:  5'- cGAGGGCGGccucggCCGGCGGagCCCc -3'
miRNA:   3'- cUUCCUGCUuuauuaGGCCGCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 48779 0.7 0.979553
Target:  5'- cGGGGACGcacggcacccCCGGCGAUUCCc -3'
miRNA:   3'- cUUCCUGCuuuauua---GGCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 18221 0.7 0.983201
Target:  5'- cGggGGACGGugggcgggaagggugGAUGGuuUCCGGgGG-CCCg -3'
miRNA:   3'- -CuuCCUGCU---------------UUAUU--AGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 41468 0.7 0.986163
Target:  5'- gGggGGGCGG------UCGGCGggCCCa -3'
miRNA:   3'- -CuuCCUGCUuuauuaGGCCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 31261 0.7 0.986163
Target:  5'- cGggGGugGGAucugGGUCUGGgGGcggCCCu -3'
miRNA:   3'- -CuuCCugCUUua--UUAGGCCgCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 136003 0.7 0.986163
Target:  5'- cGGGGGCGggG-AGUCgguCGGCG-UCCCc -3'
miRNA:   3'- cUUCCUGCuuUaUUAG---GCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 22387 0.7 0.9878
Target:  5'- uGGGGGCGGAAcc--CCGGCGAgCCg -3'
miRNA:   3'- cUUCCUGCUUUauuaGGCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 141211 0.7 0.9878
Target:  5'- -cGGGACGggGgc--CCGGaCGAcuUCCCc -3'
miRNA:   3'- cuUCCUGCuuUauuaGGCC-GCU--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.