miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 2575 0.67 0.998656
Target:  5'- -cGGGGCGggGggcGUCCGcGCGG-CUCu -3'
miRNA:   3'- cuUCCUGCuuUau-UAGGC-CGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 2606 0.68 0.99672
Target:  5'- cGggGGGCGcgGggcgccgcCCGGCGGcgCCCu -3'
miRNA:   3'- -CuuCCUGCuuUauua----GGCCGCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 3892 0.66 0.999521
Target:  5'- cGGGGGCGggGgg--CCGGC---CCCg -3'
miRNA:   3'- cUUCCUGCuuUauuaGGCCGcuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 4863 0.68 0.99672
Target:  5'- -cGGGuuCGggGUGGg-CGGCGGUCCg -3'
miRNA:   3'- cuUCCu-GCuuUAUUagGCCGCUAGGg -5'
5501 5' -48.7 NC_001798.1 + 5925 0.74 0.917624
Target:  5'- cGggGGGCGGGccguuccucgcgcacAUAAagggCCGGCG-UCCCg -3'
miRNA:   3'- -CuuCCUGCUU---------------UAUUa---GGCCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 6612 0.74 0.901918
Target:  5'- gGggGGACGggGggacgggCCGGggggacggggcccCGAUCCCa -3'
miRNA:   3'- -CuuCCUGCuuUauua---GGCC-------------GCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 7194 0.68 0.995473
Target:  5'- cGggGcGGCGAccAUGAUCCGGCGGc--- -3'
miRNA:   3'- -CuuC-CUGCUu-UAUUAGGCCGCUaggg -5'
5501 5' -48.7 NC_001798.1 + 9172 0.68 0.993864
Target:  5'- cGggGGGCaGGGUc-UCUGGCgGGUCCCc -3'
miRNA:   3'- -CuuCCUGcUUUAuuAGGCCG-CUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 12712 0.66 0.999404
Target:  5'- gGggGcGGCGGGggcGUGGUgCGGCGcgacGUCCUg -3'
miRNA:   3'- -CuuC-CUGCUU---UAUUAgGCCGC----UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 14995 0.68 0.99672
Target:  5'- gGggGGGCGAGGcguGUUgggGGCGAgcggCCCa -3'
miRNA:   3'- -CuuCCUGCUUUau-UAGg--CCGCUa---GGG- -5'
5501 5' -48.7 NC_001798.1 + 15190 0.68 0.993864
Target:  5'- gGggGGugGggGgg--CUGGCGAgCCg -3'
miRNA:   3'- -CuuCCugCuuUauuaGGCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 15288 0.66 0.999094
Target:  5'- --cGGGCGuggcGGUGGUCgCGGCGA-CCg -3'
miRNA:   3'- cuuCCUGCu---UUAUUAG-GCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 16755 0.68 0.995473
Target:  5'- gGggGGAUuAAuUGGUCCGGgGAcaCCCg -3'
miRNA:   3'- -CuuCCUGcUUuAUUAGGCCgCUa-GGG- -5'
5501 5' -48.7 NC_001798.1 + 17260 0.74 0.902576
Target:  5'- cAAGGACGcgGUGuggaCGGCGGUCUCa -3'
miRNA:   3'- cUUCCUGCuuUAUuag-GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 17352 0.72 0.951337
Target:  5'- cGGGGGCGuuuguaucGAUGGUgCCuGCGAUCCCg -3'
miRNA:   3'- cUUCCUGCu-------UUAUUA-GGcCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 17670 0.66 0.998893
Target:  5'- gGAGGGguaggaucGCGggGUGGUUCaGGCG-UCUCa -3'
miRNA:   3'- -CUUCC--------UGCuuUAUUAGG-CCGCuAGGG- -5'
5501 5' -48.7 NC_001798.1 + 18221 0.7 0.983201
Target:  5'- cGggGGACGGugggcgggaagggugGAUGGuuUCCGGgGG-CCCg -3'
miRNA:   3'- -CuuCCUGCU---------------UUAUU--AGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 22387 0.7 0.9878
Target:  5'- uGGGGGCGGAAcc--CCGGCGAgCCg -3'
miRNA:   3'- cUUCCUGCUUUauuaGGCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 22776 0.67 0.998493
Target:  5'- cGggGGACGucuccgggccgcggcGGAgacgaCCGGCGGcCCCg -3'
miRNA:   3'- -CuuCCUGC---------------UUUauua-GGCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 23053 0.69 0.992903
Target:  5'- --uGGACGAGGccGUUCGcaCGAUCCCg -3'
miRNA:   3'- cuuCCUGCUUUauUAGGCc-GCUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.