Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 26424 | 0.75 | 0.329519 |
Target: 5'- gACGCGcCCCCGCUGGuGCUGCg---- -3' miRNA: 3'- -UGCGUcGGGGCGACCuCGAUGauacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 43887 | 0.75 | 0.344722 |
Target: 5'- cCGCGGCCCCGCgGGAG-UACUGg-- -3' miRNA: 3'- uGCGUCGGGGCGaCCUCgAUGAUacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 48179 | 0.74 | 0.401807 |
Target: 5'- cACGCAcGCCCgGCUGGcGGCgguacaGCUGUGGg -3' miRNA: 3'- -UGCGU-CGGGgCGACC-UCGa-----UGAUACU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 127304 | 0.73 | 0.419185 |
Target: 5'- -gGCAGaCgCUGCUGGAGCUGCUGg-- -3' miRNA: 3'- ugCGUC-GgGGCGACCUCGAUGAUacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 75476 | 0.72 | 0.48721 |
Target: 5'- cCGCGGCCCUGCUGGAcuucacccugcgcauGCUGCc---- -3' miRNA: 3'- uGCGUCGGGGCGACCU---------------CGAUGauacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 26355 | 0.72 | 0.522143 |
Target: 5'- -gGCGGCCCgGC-GGAGCUGCgcgGGc -3' miRNA: 3'- ugCGUCGGGgCGaCCUCGAUGauaCU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 65676 | 0.72 | 0.522143 |
Target: 5'- cACGCAcGCCCCGgUGGGGCgcgUGCUcUGu -3' miRNA: 3'- -UGCGU-CGGGGCgACCUCG---AUGAuACu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 133334 | 0.71 | 0.532021 |
Target: 5'- gGCGaaccuuUAGCCCCgaggacguGCUGGAGCUGCUGa-- -3' miRNA: 3'- -UGC------GUCGGGG--------CGACCUCGAUGAUacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 51280 | 0.71 | 0.541965 |
Target: 5'- cACGCgGGCCCCGCggGGAGgCUACc-UGGg -3' miRNA: 3'- -UGCG-UCGGGGCGa-CCUC-GAUGauACU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 135351 | 0.71 | 0.572142 |
Target: 5'- gACGCcuGCCCCGCgcuccGGcAGCUGCUcgGc -3' miRNA: 3'- -UGCGu-CGGGGCGa----CC-UCGAUGAuaCu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 18208 | 0.71 | 0.572142 |
Target: 5'- cGCGCAGCCUCGCcGGGGg-ACgGUGGg -3' miRNA: 3'- -UGCGUCGGGGCGaCCUCgaUGaUACU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 134201 | 0.71 | 0.582294 |
Target: 5'- cCGCcuCCCCGCUGGAGCccCUGgggGAc -3' miRNA: 3'- uGCGucGGGGCGACCUCGauGAUa--CU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 27267 | 0.7 | 0.593503 |
Target: 5'- cCGCAGCCCCGUggcgcgcgggggggaGGGGCUGCcgcGAg -3' miRNA: 3'- uGCGUCGGGGCGa--------------CCUCGAUGauaCU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 2547 | 0.7 | 0.61294 |
Target: 5'- gGCGCGGcCCCCGCgGGAGggGCg---- -3' miRNA: 3'- -UGCGUC-GGGGCGaCCUCgaUGauacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 70341 | 0.7 | 0.623194 |
Target: 5'- gGCGUgcuGGCaCCCGCuccUGGAGCaACUGUGc -3' miRNA: 3'- -UGCG---UCG-GGGCG---ACCUCGaUGAUACu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 120850 | 0.69 | 0.643715 |
Target: 5'- -gGCGGCCCCGC-GGAGgUugUAc-- -3' miRNA: 3'- ugCGUCGGGGCGaCCUCgAugAUacu -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 153060 | 0.69 | 0.664199 |
Target: 5'- gGCGCcGCCCC-CUGGGGCggGCg--GAg -3' miRNA: 3'- -UGCGuCGGGGcGACCUCGa-UGauaCU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 27562 | 0.69 | 0.674406 |
Target: 5'- -gGCGGCgCCCGCgggGGAGCggccgGCUccGGg -3' miRNA: 3'- ugCGUCG-GGGCGa--CCUCGa----UGAuaCU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 66158 | 0.68 | 0.701767 |
Target: 5'- cUGCAGcCCCCGCUcgacgagcguguucGGGG-UGCUGUGGa -3' miRNA: 3'- uGCGUC-GGGGCGA--------------CCUCgAUGAUACU- -5' |
|||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 32577 | 0.68 | 0.704784 |
Target: 5'- cCGCGGcCCCCGCgUGGAGCcGCc---- -3' miRNA: 3'- uGCGUC-GGGGCG-ACCUCGaUGauacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home