miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5503 5' -57.3 NC_001798.1 + 2547 0.7 0.61294
Target:  5'- gGCGCGGcCCCCGCgGGAGggGCg---- -3'
miRNA:   3'- -UGCGUC-GGGGCGaCCUCgaUGauacu -5'
5503 5' -57.3 NC_001798.1 + 18208 0.71 0.572142
Target:  5'- cGCGCAGCCUCGCcGGGGg-ACgGUGGg -3'
miRNA:   3'- -UGCGUCGGGGCGaCCUCgaUGaUACU- -5'
5503 5' -57.3 NC_001798.1 + 21937 0.68 0.754055
Target:  5'- cUGCGGCCCCGCccccuuugggcGGAGC-GCgggAUGAc -3'
miRNA:   3'- uGCGUCGGGGCGa----------CCUCGaUGa--UACU- -5'
5503 5' -57.3 NC_001798.1 + 22074 0.66 0.843379
Target:  5'- cUGCGGCCCCGCccccuuUGGGGCg------- -3'
miRNA:   3'- uGCGUCGGGGCG------ACCUCGaugauacu -5'
5503 5' -57.3 NC_001798.1 + 25416 0.68 0.74438
Target:  5'- cGCGCuGGCCUCGCUGGccgcgcGCUGCg---- -3'
miRNA:   3'- -UGCG-UCGGGGCGACCu-----CGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 26313 0.66 0.851382
Target:  5'- cUGCGGCCCgucuacguggCGCUGGGGCgcgACgccGUGc -3'
miRNA:   3'- uGCGUCGGG----------GCGACCUCGa--UGa--UACu -5'
5503 5' -57.3 NC_001798.1 + 26355 0.72 0.522143
Target:  5'- -gGCGGCCCgGC-GGAGCUGCgcgGGc -3'
miRNA:   3'- ugCGUCGGGgCGaCCUCGAUGauaCU- -5'
5503 5' -57.3 NC_001798.1 + 26424 0.75 0.329519
Target:  5'- gACGCGcCCCCGCUGGuGCUGCg---- -3'
miRNA:   3'- -UGCGUcGGGGCGACCuCGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 27267 0.7 0.593503
Target:  5'- cCGCAGCCCCGUggcgcgcgggggggaGGGGCUGCcgcGAg -3'
miRNA:   3'- uGCGUCGGGGCGa--------------CCUCGAUGauaCU- -5'
5503 5' -57.3 NC_001798.1 + 27562 0.69 0.674406
Target:  5'- -gGCGGCgCCCGCgggGGAGCggccgGCUccGGg -3'
miRNA:   3'- ugCGUCG-GGGCGa--CCUCGa----UGAuaCU- -5'
5503 5' -57.3 NC_001798.1 + 32577 0.68 0.704784
Target:  5'- cCGCGGcCCCCGCgUGGAGCcGCc---- -3'
miRNA:   3'- uGCGUC-GGGGCG-ACCUCGaUGauacu -5'
5503 5' -57.3 NC_001798.1 + 43887 0.75 0.344722
Target:  5'- cCGCGGCCCCGCgGGAG-UACUGg-- -3'
miRNA:   3'- uGCGUCGGGGCGaCCUCgAUGAUacu -5'
5503 5' -57.3 NC_001798.1 + 46597 0.68 0.714799
Target:  5'- cGCGC-GUCCCGUUcGGGGCUACg---- -3'
miRNA:   3'- -UGCGuCGGGGCGA-CCUCGAUGauacu -5'
5503 5' -57.3 NC_001798.1 + 47594 0.66 0.835185
Target:  5'- cGCGCGGgaCCCaCGa-GGAGCUguACUAUGGc -3'
miRNA:   3'- -UGCGUC--GGG-GCgaCCUCGA--UGAUACU- -5'
5503 5' -57.3 NC_001798.1 + 48179 0.74 0.401807
Target:  5'- cACGCAcGCCCgGCUGGcGGCgguacaGCUGUGGg -3'
miRNA:   3'- -UGCGU-CGGGgCGACC-UCGa-----UGAUACU- -5'
5503 5' -57.3 NC_001798.1 + 51280 0.71 0.541965
Target:  5'- cACGCgGGCCCCGCggGGAGgCUACc-UGGg -3'
miRNA:   3'- -UGCG-UCGGGGCGa-CCUC-GAUGauACU- -5'
5503 5' -57.3 NC_001798.1 + 61460 0.67 0.806867
Target:  5'- aGCGCcggggccuccgGGCCCCGgaGG-GCUACUuuacccccaucgccGUGGa -3'
miRNA:   3'- -UGCG-----------UCGGGGCgaCCuCGAUGA--------------UACU- -5'
5503 5' -57.3 NC_001798.1 + 65676 0.72 0.522143
Target:  5'- cACGCAcGCCCCGgUGGGGCgcgUGCUcUGu -3'
miRNA:   3'- -UGCGU-CGGGGCgACCUCG---AUGAuACu -5'
5503 5' -57.3 NC_001798.1 + 66158 0.68 0.701767
Target:  5'- cUGCAGcCCCCGCUcgacgagcguguucGGGG-UGCUGUGGa -3'
miRNA:   3'- uGCGUC-GGGGCGA--------------CCUCgAUGAUACU- -5'
5503 5' -57.3 NC_001798.1 + 70341 0.7 0.623194
Target:  5'- gGCGUgcuGGCaCCCGCuccUGGAGCaACUGUGc -3'
miRNA:   3'- -UGCG---UCG-GGGCG---ACCUCGaUGAUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.