Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5503 | 5' | -57.3 | NC_001798.1 | + | 154054 | 0.66 | 0.851382 |
Target: 5'- gGCGCGGCaCgGCUGGAGCgccgggGCg---- -3' miRNA: 3'- -UGCGUCGgGgCGACCUCGa-----UGauacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 153060 | 0.69 | 0.664199 |
Target: 5'- gGCGCcGCCCC-CUGGGGCggGCg--GAg -3' miRNA: 3'- -UGCGuCGGGGcGACCUCGa-UGauaCU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 149983 | 0.67 | 0.791584 |
Target: 5'- gGCGCGGCgCCCGCggacgccGGGGCgagcgGCccGUGGc -3' miRNA: 3'- -UGCGUCG-GGGCGa------CCUCGa----UGa-UACU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 135351 | 0.71 | 0.572142 |
Target: 5'- gACGCcuGCCCCGCgcuccGGcAGCUGCUcgGc -3' miRNA: 3'- -UGCGu-CGGGGCGa----CC-UCGAUGAuaCu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 134201 | 0.71 | 0.582294 |
Target: 5'- cCGCcuCCCCGCUGGAGCccCUGgggGAc -3' miRNA: 3'- uGCGucGGGGCGACCUCGauGAUa--CU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 133334 | 0.71 | 0.532021 |
Target: 5'- gGCGaaccuuUAGCCCCgaggacguGCUGGAGCUGCUGa-- -3' miRNA: 3'- -UGC------GUCGGGG--------CGACCUCGAUGAUacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 133204 | 0.67 | 0.809517 |
Target: 5'- aACGCcGCCggagaGCUGGAGCUugUGg-- -3' miRNA: 3'- -UGCGuCGGgg---CGACCUCGAugAUacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 129538 | 0.66 | 0.818246 |
Target: 5'- gGCGCGGCCCUGCUGcuGCcgACa---- -3' miRNA: 3'- -UGCGUCGGGGCGACcuCGa-UGauacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 127304 | 0.73 | 0.419185 |
Target: 5'- -gGCAGaCgCUGCUGGAGCUGCUGg-- -3' miRNA: 3'- ugCGUC-GgGGCGACCUCGAUGAUacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 120850 | 0.69 | 0.643715 |
Target: 5'- -gGCGGCCCCGC-GGAGgUugUAc-- -3' miRNA: 3'- ugCGUCGGGGCGaCCUCgAugAUacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 115652 | 0.66 | 0.818246 |
Target: 5'- cAUGCAGCCCgacaaCGCcaaccuggcucUGGAGCUGCa---- -3' miRNA: 3'- -UGCGUCGGG-----GCG-----------ACCUCGAUGauacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 114211 | 0.67 | 0.773073 |
Target: 5'- gACGUAgaguuugacGCCCUGCUGGGGUccUACUGc-- -3' miRNA: 3'- -UGCGU---------CGGGGCGACCUCG--AUGAUacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 97582 | 0.67 | 0.791584 |
Target: 5'- aGCGCGGCCCCGagccaGGGGCgcagggGCcg-GAg -3' miRNA: 3'- -UGCGUCGGGGCga---CCUCGa-----UGauaCU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 96670 | 0.68 | 0.720774 |
Target: 5'- gGCGCcacGGCCgCGCUGGAGCgcguccgggaguUUAUGGu -3' miRNA: 3'- -UGCG---UCGGgGCGACCUCGau----------GAUACU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 92277 | 0.67 | 0.809517 |
Target: 5'- cGCGCcuGUCCgGCcgaaggccUGGAGCUGCUGUc- -3' miRNA: 3'- -UGCGu-CGGGgCG--------ACCUCGAUGAUAcu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 77592 | 0.68 | 0.74438 |
Target: 5'- gGCGC-GCCCUGCaGGAGCUGg----- -3' miRNA: 3'- -UGCGuCGGGGCGaCCUCGAUgauacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 77484 | 0.68 | 0.754055 |
Target: 5'- cCGCGGCCCgCGCgacGAccGCUGCUcgGGa -3' miRNA: 3'- uGCGUCGGG-GCGac-CU--CGAUGAuaCU- -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 76577 | 0.66 | 0.854527 |
Target: 5'- gGCGacCGGCCCCGCgccguacgucgacgGGGGCggGCUGUc- -3' miRNA: 3'- -UGC--GUCGGGGCGa-------------CCUCGa-UGAUAcu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 75476 | 0.72 | 0.48721 |
Target: 5'- cCGCGGCCCUGCUGGAcuucacccugcgcauGCUGCc---- -3' miRNA: 3'- uGCGUCGGGGCGACCU---------------CGAUGauacu -5' |
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5503 | 5' | -57.3 | NC_001798.1 | + | 70341 | 0.7 | 0.623194 |
Target: 5'- gGCGUgcuGGCaCCCGCuccUGGAGCaACUGUGc -3' miRNA: 3'- -UGCG---UCG-GGGCG---ACCUCGaUGAUACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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