miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 2565 0.66 0.87962
Target:  5'- gGGGCGgccgcggGGCGGggggCGuccgcGCGGCucuucuUCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGCCa---GC-----UGUCGu-----AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 102384 0.66 0.87962
Target:  5'- -cGCcUGGCGGUCGGCGGCGaUGGc- -3'
miRNA:   3'- ccCGcACUGCCAGCUGUCGUaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 114869 0.66 0.87962
Target:  5'- cGGGCG-GcCGGUCGACGGgGUgcUGGu- -3'
miRNA:   3'- -CCCGCaCuGCCAGCUGUCgUA--GCCcu -5'
5504 3' -57.6 NC_001798.1 + 42198 0.66 0.884407
Target:  5'- gGGGCGUGaaaguggaagcgccGCgGGUCGGCGuGCG-CGGcGAc -3'
miRNA:   3'- -CCCGCAC--------------UG-CCAGCUGU-CGUaGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 28787 0.66 0.886427
Target:  5'- aGGCG--GCGG-CGGCGGCGcgCGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGUCGUa-GCCCu -5'
5504 3' -57.6 NC_001798.1 + 138505 0.66 0.865383
Target:  5'- aGGGCGUGGCacgCGACGaucUCGGGGc -3'
miRNA:   3'- -CCCGCACUGccaGCUGUcguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26993 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153773 0.67 0.827225
Target:  5'- gGGGCGcuGCGGcccgcgcuccuugcgCGGCGGCggCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCa--------------GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 39856 0.67 0.834561
Target:  5'- cGGGCGaGGC-GUCGA-GGCuUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2441 0.67 0.842545
Target:  5'- cGGCGgcUGGCGG-CGcCAGCcgcccugcggGUCGGGGc -3'
miRNA:   3'- cCCGC--ACUGCCaGCuGUCG----------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153077 0.67 0.842545
Target:  5'- cGGGCGgagcGGCGG--GGCGGCGcCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCagCUGUCGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 76964 0.67 0.850348
Target:  5'- cGGGCGgaccUGugGGggcugcuggGGCAGUAcCGGGAg -3'
miRNA:   3'- -CCCGC----ACugCCag-------CUGUCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150847 0.67 0.850348
Target:  5'- gGGGCGc--CGGUCGggucGCGGCGggcUGGGAg -3'
miRNA:   3'- -CCCGCacuGCCAGC----UGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150106 0.67 0.850348
Target:  5'- gGGGCGgcggaggaagaGGCGGagGACgaGGCcgCGGGGc -3'
miRNA:   3'- -CCCGCa----------CUGCCagCUG--UCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150437 0.67 0.850348
Target:  5'- gGGGCGgacuccgGACGcGcggggCGACGGCcgcgCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGC-Ca----GCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 3313 0.66 0.857962
Target:  5'- cGGCaacggGGCGG-CGGCGGCggCGGGc -3'
miRNA:   3'- cCCGca---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 26814 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26874 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26844 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26963 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.