miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 45175 0.68 0.783237
Target:  5'- aGGGCuccaccaucGACGGggccguugCGGC-GCAUCGGGAc -3'
miRNA:   3'- -CCCGca-------CUGCCa-------GCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 45928 0.66 0.872604
Target:  5'- gGGGgGUGGCGGUC----GCGUCcGGAa -3'
miRNA:   3'- -CCCgCACUGCCAGcuguCGUAGcCCU- -5'
5504 3' -57.6 NC_001798.1 + 48536 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 48572 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 48608 0.67 0.809587
Target:  5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3'
miRNA:   3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 54387 0.67 0.818074
Target:  5'- gGGGCcgcgGcGCGGUCGGCGGgAgcugcCGGGAc -3'
miRNA:   3'- -CCCGca--C-UGCCAGCUGUCgUa----GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 57409 0.69 0.717637
Target:  5'- cGGGuCGUGGCGGUUG-CAucGCA-CGGGc -3'
miRNA:   3'- -CCC-GCACUGCCAGCuGU--CGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 66628 0.7 0.678433
Target:  5'- cGGGCuc-GCGGUCGACGGCGUCc--- -3'
miRNA:   3'- -CCCGcacUGCCAGCUGUCGUAGcccu -5'
5504 3' -57.6 NC_001798.1 + 66766 0.68 0.783237
Target:  5'- gGGGUGcGGCGG-CGugGGCcgCGGa- -3'
miRNA:   3'- -CCCGCaCUGCCaGCugUCGuaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 70310 0.77 0.325611
Target:  5'- cGGGCGcGGCGGUCGGCccGGCGgaggcgCGGGc -3'
miRNA:   3'- -CCCGCaCUGCCAGCUG--UCGUa-----GCCCu -5'
5504 3' -57.6 NC_001798.1 + 71582 0.69 0.717637
Target:  5'- cGGGCGgcucugugaGGCGGUCGGCcu-GUCGGGc -3'
miRNA:   3'- -CCCGCa--------CUGCCAGCUGucgUAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 73650 0.66 0.878928
Target:  5'- uGGGCGgGGgGGUucgggCGGCGGaaacaacaguacuCAUCGGGAc -3'
miRNA:   3'- -CCCGCaCUgCCA-----GCUGUC-------------GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 76964 0.67 0.850348
Target:  5'- cGGGCGgaccUGugGGggcugcuggGGCAGUAcCGGGAg -3'
miRNA:   3'- -CCCGC----ACugCCag-------CUGUCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 83577 0.67 0.826401
Target:  5'- gGGGCgGUGaaacuGCGG--GGCGGcCAUCGGGAc -3'
miRNA:   3'- -CCCG-CAC-----UGCCagCUGUC-GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 85830 0.76 0.355379
Target:  5'- gGGGCGggGGCGGgCGGgGGC-UCGGGAa -3'
miRNA:   3'- -CCCGCa-CUGCCaGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 95380 0.7 0.678433
Target:  5'- aGGGCGgggcGGCGGUCGccaGCAGCGUguuugUGGcGAc -3'
miRNA:   3'- -CCCGCa---CUGCCAGC---UGUCGUA-----GCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 95665 0.72 0.539801
Target:  5'- cGGCGUcguucGGCGGUuuggCGGCGGCggCGGGGg -3'
miRNA:   3'- cCCGCA-----CUGCCA----GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 96038 0.72 0.530145
Target:  5'- cGGGCG-GGCGGgCGACGGgCAUaaagaGGGGa -3'
miRNA:   3'- -CCCGCaCUGCCaGCUGUC-GUAg----CCCU- -5'
5504 3' -57.6 NC_001798.1 + 97250 0.7 0.658581
Target:  5'- cGGGCGgcgGGCGGagcacuUCGAUcGCGcguUCGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCC------AGCUGuCGU---AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 100755 0.68 0.765012
Target:  5'- gGGGCGc-GCGGUCGGCAagGUAgucaUGGGAg -3'
miRNA:   3'- -CCCGCacUGCCAGCUGU--CGUa---GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.