miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 26874 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26919 0.7 0.668521
Target:  5'- cGGGCGggcGGgGGUCGggcggGCGGgGUCGGGc -3'
miRNA:   3'- -CCCGCa--CUgCCAGC-----UGUCgUAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 26963 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26993 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 27221 0.72 0.559286
Target:  5'- gGGGCGgggcGCGGgggaGGCGGCcgCGGGGg -3'
miRNA:   3'- -CCCGCac--UGCCag--CUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 27391 0.66 0.865383
Target:  5'- aGGGCGa-GCGGUggugCGACuGGCGucuUCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCA----GCUG-UCGU---AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 28787 0.66 0.886427
Target:  5'- aGGCG--GCGG-CGGCGGCGcgCGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGUCGUa-GCCCu -5'
5504 3' -57.6 NC_001798.1 + 29934 0.67 0.82309
Target:  5'- gGGGCGggacgcuUGACGGggcCGACccccggcccgcuuaAGCGgUCGGGGg -3'
miRNA:   3'- -CCCGC-------ACUGCCa--GCUG--------------UCGU-AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 30948 0.69 0.736855
Target:  5'- cGGGCGgggGGCGGgCGGgGGUcgggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCCaGCUgUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 34613 0.72 0.559286
Target:  5'- cGGGCaaagGGCGG-CGGCGGCGggGGGGg -3'
miRNA:   3'- -CCCGca--CUGCCaGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 35804 0.72 0.569103
Target:  5'- cGGGCG--GCGGgggGGgGGCGUCGGGAc -3'
miRNA:   3'- -CCCGCacUGCCag-CUgUCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36149 0.68 0.755728
Target:  5'- gGGGCGcGGCGG-CGGuCGGgGUgGGGGg -3'
miRNA:   3'- -CCCGCaCUGCCaGCU-GUCgUAgCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36303 0.7 0.668521
Target:  5'- uGGGUGUGGCGG-CGGgGcGCGggcCGGGGc -3'
miRNA:   3'- -CCCGCACUGCCaGCUgU-CGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36419 0.77 0.297736
Target:  5'- cGGGCGgGGCGGUgGgGCGGgGUCGGGGu -3'
miRNA:   3'- -CCCGCaCUGCCAgC-UGUCgUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36506 0.74 0.42907
Target:  5'- cGGGCGgccgGGCGGgggcgcgCGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa---CUGCCa------GCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36556 0.71 0.638649
Target:  5'- cGGGCGggGGCGcG-CGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa-CUGC-CaGCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36598 0.71 0.638649
Target:  5'- cGGGCGggGGCGcG-CGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa-CUGC-CaGCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 39856 0.67 0.834561
Target:  5'- cGGGCGaGGC-GUCGA-GGCuUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUgUCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 41466 0.67 0.821425
Target:  5'- cGGGgGgGGCGGUCGgcgggcccagaaacaACAGCGUCuGGu -3'
miRNA:   3'- -CCCgCaCUGCCAGC---------------UGUCGUAGcCCu -5'
5504 3' -57.6 NC_001798.1 + 42198 0.66 0.884407
Target:  5'- gGGGCGUGaaaguggaagcgccGCgGGUCGGCGuGCG-CGGcGAc -3'
miRNA:   3'- -CCCGCAC--------------UG-CCAGCUGU-CGUaGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.