miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 136135 0.68 0.774185
Target:  5'- aGGCGUGugGGgCGAgGGC---GGGAg -3'
miRNA:   3'- cCCGCACugCCaGCUgUCGuagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 134342 0.73 0.520552
Target:  5'- uGGuCGUGAgGGUCGAaagGGCGUCGuGGGg -3'
miRNA:   3'- cCC-GCACUgCCAGCUg--UCGUAGC-CCU- -5'
5504 3' -57.6 NC_001798.1 + 131347 0.69 0.746339
Target:  5'- cGGGCGcGAC-GUCGGCgcccggcgcGGCcUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUG---------UCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 129316 0.71 0.588858
Target:  5'- aGGGCGUGACguuccgccuGGagGACGGCcgCGGa- -3'
miRNA:   3'- -CCCGCACUG---------CCagCUGUCGuaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 127275 0.66 0.872604
Target:  5'- cGGGC-UGGCGGUCGAUcucuacGCccUGGGGc -3'
miRNA:   3'- -CCCGcACUGCCAGCUGu-----CGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 125656 0.71 0.597789
Target:  5'- cGGGCGaGGCGGg-GGCGGCugaggucagggggGUCGGGGc -3'
miRNA:   3'- -CCCGCaCUGCCagCUGUCG-------------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 122819 0.75 0.411922
Target:  5'- uGGGCGgccagGGCGGUCGGgGGCggCGGcGGc -3'
miRNA:   3'- -CCCGCa----CUGCCAGCUgUCGuaGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 114869 0.66 0.87962
Target:  5'- cGGGCG-GcCGGUCGACGGgGUgcUGGu- -3'
miRNA:   3'- -CCCGCaCuGCCAGCUGUCgUA--GCCcu -5'
5504 3' -57.6 NC_001798.1 + 111606 0.67 0.826401
Target:  5'- gGGGCGgccuccugGAgcccCGGgggCGGCAgacucGCGUCGGGGg -3'
miRNA:   3'- -CCCGCa-------CU----GCCa--GCUGU-----CGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 109684 0.69 0.735902
Target:  5'- cGGGCGccguuccUGGCGGgcgcgcccUCGGCcgAGCAgCGGGAa -3'
miRNA:   3'- -CCCGC-------ACUGCC--------AGCUG--UCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 105709 0.69 0.706944
Target:  5'- gGGGCGacaGCGGUCGACacccaggGGCuguuGUCGGGu -3'
miRNA:   3'- -CCCGCac-UGCCAGCUG-------UCG----UAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 105611 0.78 0.278069
Target:  5'- aGGGCGgcgGGCGGgcgaCGACGGCGcucCGGGAa -3'
miRNA:   3'- -CCCGCa--CUGCCa---GCUGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 104448 0.69 0.717637
Target:  5'- uGGUGuUGGCGGUCGcccgcaGCAGCGUCuGGu -3'
miRNA:   3'- cCCGC-ACUGCCAGC------UGUCGUAGcCCu -5'
5504 3' -57.6 NC_001798.1 + 102384 0.66 0.87962
Target:  5'- -cGCcUGGCGGUCGGCGGCGaUGGc- -3'
miRNA:   3'- ccCGcACUGCCAGCUGUCGUaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 101986 0.7 0.689294
Target:  5'- gGGGCGaUGuGCGG-CGGCGGCAgauagacggccuuggCGGGGu -3'
miRNA:   3'- -CCCGC-AC-UGCCaGCUGUCGUa--------------GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 101878 0.69 0.736855
Target:  5'- uGGGCGUGuGCGGggGAgGGCugauguagCGGGGg -3'
miRNA:   3'- -CCCGCAC-UGCCagCUgUCGua------GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 101847 0.69 0.746339
Target:  5'- aGGCGUGGguccCGG-CGGCGGCGgaGGGGg -3'
miRNA:   3'- cCCGCACU----GCCaGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 100755 0.68 0.765012
Target:  5'- gGGGCGc-GCGGUCGGCAagGUAgucaUGGGAg -3'
miRNA:   3'- -CCCGCacUGCCAGCUGU--CGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 97250 0.7 0.658581
Target:  5'- cGGGCGgcgGGCGGagcacuUCGAUcGCGcguUCGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCC------AGCUGuCGU---AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 96038 0.72 0.530145
Target:  5'- cGGGCG-GGCGGgCGACGGgCAUaaagaGGGGa -3'
miRNA:   3'- -CCCGCaCUGCCaGCUGUC-GUAg----CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.