miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 154397 0.73 0.492203
Target:  5'- gGGGCGcgaaGGCGGgCGGCGGCggCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 154291 0.68 0.759454
Target:  5'- cGGGcCGUGuuGCGGgcccucuuaaggggCGGCGGCAggaCGGGGa -3'
miRNA:   3'- -CCC-GCAC--UGCCa-------------GCUGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153773 0.67 0.827225
Target:  5'- gGGGCGcuGCGGcccgcgcuccuugcgCGGCGGCggCGGGGg -3'
miRNA:   3'- -CCCGCacUGCCa--------------GCUGUCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 153610 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 153572 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 153534 0.72 0.559286
Target:  5'- gGGGCGUcaGGgGGUCGGaggGGCGUCaGGGGg -3'
miRNA:   3'- -CCCGCA--CUgCCAGCUg--UCGUAG-CCCU- -5'
5504 3' -57.6 NC_001798.1 + 153077 0.67 0.842545
Target:  5'- cGGGCGgagcGGCGG--GGCGGCGcCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCagCUGUCGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 151789 0.66 0.877537
Target:  5'- aGGCGUG-CGGggCGGCgggcugcuugacaaAGCAaCGGGGg -3'
miRNA:   3'- cCCGCACuGCCa-GCUG--------------UCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150847 0.67 0.850348
Target:  5'- gGGGCGc--CGGUCGggucGCGGCGggcUGGGAg -3'
miRNA:   3'- -CCCGCacuGCCAGC----UGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150579 0.66 0.886427
Target:  5'- gGGGCGgcGCGGa-GACGGCGg-GGGAg -3'
miRNA:   3'- -CCCGCacUGCCagCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150437 0.67 0.850348
Target:  5'- gGGGCGgacuccgGACGcGcggggCGACGGCcgcgCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGC-Ca----GCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150194 0.68 0.789497
Target:  5'- cGGCGUGGgGGgCGGCAccggggguguugguGCcgCGGGGg -3'
miRNA:   3'- cCCGCACUgCCaGCUGU--------------CGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150106 0.67 0.850348
Target:  5'- gGGGCGgcggaggaagaGGCGGagGACgaGGCcgCGGGGc -3'
miRNA:   3'- -CCCGCa----------CUGCCagCUG--UCGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 148389 0.71 0.60276
Target:  5'- cGGGCGUGGCGGgCaggugugcgggcgggGugGGCGcCGGGGc -3'
miRNA:   3'- -CCCGCACUGCCaG---------------CugUCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 148282 0.71 0.638649
Target:  5'- cGGGCGUGGCGGgcaGGuguGCGggCGGGGu -3'
miRNA:   3'- -CCCGCACUGCCag-CUgu-CGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 145806 0.74 0.464587
Target:  5'- cGGGCGgcagaaacGCGGgcgCGGCGGCGgUCGGGGu -3'
miRNA:   3'- -CCCGCac------UGCCa--GCUGUCGU-AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 144575 0.66 0.865383
Target:  5'- aGGGCGagGACGGgCGGCuggguGGCGagGGGc -3'
miRNA:   3'- -CCCGCa-CUGCCaGCUG-----UCGUagCCCu -5'
5504 3' -57.6 NC_001798.1 + 139363 0.66 0.865383
Target:  5'- cGGCGUccGGCGGg-GAgGGCucgCGGGAc -3'
miRNA:   3'- cCCGCA--CUGCCagCUgUCGua-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 138505 0.66 0.865383
Target:  5'- aGGGCGUGGCacgCGACGaucUCGGGGc -3'
miRNA:   3'- -CCCGCACUGccaGCUGUcguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 138213 0.67 0.809587
Target:  5'- aGGGaggGUG-UGGUCGACGGCG--GGGGu -3'
miRNA:   3'- -CCCg--CACuGCCAGCUGUCGUagCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.