miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 59 0.73 0.492203
Target:  5'- gGGGCGcgaaGGCGGgCGGCGGCggCGGGc -3'
miRNA:   3'- -CCCGCa---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 1636 0.69 0.717637
Target:  5'- aGGCGcaGCGG-CGGC-GCGUCGGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2441 0.67 0.842545
Target:  5'- cGGCGgcUGGCGG-CGcCAGCcgcccugcggGUCGGGGc -3'
miRNA:   3'- cCCGC--ACUGCCaGCuGUCG----------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2507 0.78 0.278069
Target:  5'- gGGGCGcGGCGGccgcggCGGCGGCGUCGGcGGg -3'
miRNA:   3'- -CCCGCaCUGCCa-----GCUGUCGUAGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 2565 0.66 0.87962
Target:  5'- gGGGCGgccgcggGGCGGggggCGuccgcGCGGCucuucuUCGGGGg -3'
miRNA:   3'- -CCCGCa------CUGCCa---GC-----UGUCGu-----AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2961 0.71 0.598783
Target:  5'- aGGCGgGGCGcGUCGGCGuGCggCGGGGc -3'
miRNA:   3'- cCCGCaCUGC-CAGCUGU-CGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 3313 0.66 0.857962
Target:  5'- cGGCaacggGGCGG-CGGCGGCggCGGGc -3'
miRNA:   3'- cCCGca---CUGCCaGCUGUCGuaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 3347 0.71 0.608731
Target:  5'- cGGGCGUcgucgccgucguGGCGGUUGGCGucgccgccGuCGUCGGGGg -3'
miRNA:   3'- -CCCGCA------------CUGCCAGCUGU--------C-GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 4847 0.69 0.736855
Target:  5'- cGGCGgggcGACGGUC--CGGguUCGGGGu -3'
miRNA:   3'- cCCGCa---CUGCCAGcuGUCguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 6001 0.71 0.618697
Target:  5'- cGGCGgagaccggGACGGcagCGGCGGCAUCGcGAa -3'
miRNA:   3'- cCCGCa-------CUGCCa--GCUGUCGUAGCcCU- -5'
5504 3' -57.6 NC_001798.1 + 6247 0.68 0.800946
Target:  5'- cGGGCGgggGACGGgggGACGGgc-CGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCCag-CUGUCguaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 8885 0.67 0.826401
Target:  5'- aGGGCGcUGGCGGagGGCggaGGCGaaggUGGGGu -3'
miRNA:   3'- -CCCGC-ACUGCCagCUG---UCGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 9702 0.72 0.559286
Target:  5'- cGGGCGgGugGGcUCGACGGgcUCGGGc -3'
miRNA:   3'- -CCCGCaCugCC-AGCUGUCguAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 11316 0.67 0.825576
Target:  5'- aGGGaagGcAUGGUCGuggacgacgacgaACGGCGUCGGGGu -3'
miRNA:   3'- -CCCgcaC-UGCCAGC-------------UGUCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 15288 0.7 0.668521
Target:  5'- cGGGCGUGGCGGUgGucGCGGCGaccgaaacgUUGGcGGc -3'
miRNA:   3'- -CCCGCACUGCCAgC--UGUCGU---------AGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 16613 0.72 0.559286
Target:  5'- gGGGCucGUGACGGaCGAC-GCGcCGGGGc -3'
miRNA:   3'- -CCCG--CACUGCCaGCUGuCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 20342 0.67 0.809587
Target:  5'- uGGCGcaGGCGGUUggcgcugccgGGCGGguUCGGGGc -3'
miRNA:   3'- cCCGCa-CUGCCAG----------CUGUCguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 21731 0.66 0.865383
Target:  5'- cGGUGUGccccUGGUgCGGCGGCGacCGGGAc -3'
miRNA:   3'- cCCGCACu---GCCA-GCUGUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26814 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26844 0.66 0.857962
Target:  5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.