miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 35804 0.72 0.569103
Target:  5'- cGGGCG--GCGGgggGGgGGCGUCGGGAc -3'
miRNA:   3'- -CCCGCacUGCCag-CUgUCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 129316 0.71 0.588858
Target:  5'- aGGGCGUGACguuccgccuGGagGACGGCcgCGGa- -3'
miRNA:   3'- -CCCGCACUG---------CCagCUGUCGuaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 125656 0.71 0.597789
Target:  5'- cGGGCGaGGCGGg-GGCGGCugaggucagggggGUCGGGGc -3'
miRNA:   3'- -CCCGCaCUGCCagCUGUCG-------------UAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 2961 0.71 0.598783
Target:  5'- aGGCGgGGCGcGUCGGCGuGCggCGGGGc -3'
miRNA:   3'- cCCGCaCUGC-CAGCUGU-CGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 148389 0.71 0.60276
Target:  5'- cGGGCGUGGCGGgCaggugugcgggcgggGugGGCGcCGGGGc -3'
miRNA:   3'- -CCCGCACUGCCaG---------------CugUCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 3347 0.71 0.608731
Target:  5'- cGGGCGUcgucgccgucguGGCGGUUGGCGucgccgccGuCGUCGGGGg -3'
miRNA:   3'- -CCCGCA------------CUGCCAGCUGU--------C-GUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 6001 0.71 0.618697
Target:  5'- cGGCGgagaccggGACGGcagCGGCGGCAUCGcGAa -3'
miRNA:   3'- cCCGCa-------CUGCCa--GCUGUCGUAGCcCU- -5'
5504 3' -57.6 NC_001798.1 + 36556 0.71 0.638649
Target:  5'- cGGGCGggGGCGcG-CGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa-CUGC-CaGCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 148282 0.71 0.638649
Target:  5'- cGGGCGUGGCGGgcaGGuguGCGggCGGGGu -3'
miRNA:   3'- -CCCGCACUGCCag-CUgu-CGUa-GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36598 0.71 0.638649
Target:  5'- cGGGCGggGGCGcG-CGGCGGCcgggCGGGGg -3'
miRNA:   3'- -CCCGCa-CUGC-CaGCUGUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 97250 0.7 0.658581
Target:  5'- cGGGCGgcgGGCGGagcacuUCGAUcGCGcguUCGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCC------AGCUGuCGU---AGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 26919 0.7 0.668521
Target:  5'- cGGGCGggcGGgGGUCGggcggGCGGgGUCGGGc -3'
miRNA:   3'- -CCCGCa--CUgCCAGC-----UGUCgUAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 15288 0.7 0.668521
Target:  5'- cGGGCGUGGCGGUgGucGCGGCGaccgaaacgUUGGcGGc -3'
miRNA:   3'- -CCCGCACUGCCAgC--UGUCGU---------AGCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 36303 0.7 0.668521
Target:  5'- uGGGUGUGGCGG-CGGgGcGCGggcCGGGGc -3'
miRNA:   3'- -CCCGCACUGCCaGCUgU-CGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 95380 0.7 0.678433
Target:  5'- aGGGCGgggcGGCGGUCGccaGCAGCGUguuugUGGcGAc -3'
miRNA:   3'- -CCCGCa---CUGCCAGC---UGUCGUA-----GCC-CU- -5'
5504 3' -57.6 NC_001798.1 + 66628 0.7 0.678433
Target:  5'- cGGGCuc-GCGGUCGACGGCGUCc--- -3'
miRNA:   3'- -CCCGcacUGCCAGCUGUCGUAGcccu -5'
5504 3' -57.6 NC_001798.1 + 101986 0.7 0.689294
Target:  5'- gGGGCGaUGuGCGG-CGGCGGCAgauagacggccuuggCGGGGu -3'
miRNA:   3'- -CCCGC-AC-UGCCaGCUGUCGUa--------------GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 105709 0.69 0.706944
Target:  5'- gGGGCGacaGCGGUCGACacccaggGGCuguuGUCGGGu -3'
miRNA:   3'- -CCCGCac-UGCCAGCUG-------UCG----UAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 1636 0.69 0.717637
Target:  5'- aGGCGcaGCGG-CGGC-GCGUCGGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 57409 0.69 0.717637
Target:  5'- cGGGuCGUGGCGGUUG-CAucGCA-CGGGc -3'
miRNA:   3'- -CCC-GCACUGCCAGCuGU--CGUaGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.