Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5504 | 3' | -57.6 | NC_001798.1 | + | 127275 | 0.66 | 0.872604 |
Target: 5'- cGGGC-UGGCGGUCGAUcucuacGCccUGGGGc -3' miRNA: 3'- -CCCGcACUGCCAGCUGu-----CGuaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 11316 | 0.67 | 0.825576 |
Target: 5'- aGGGaagGcAUGGUCGuggacgacgacgaACGGCGUCGGGGu -3' miRNA: 3'- -CCCgcaC-UGCCAGC-------------UGUCGUAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 29934 | 0.67 | 0.82309 |
Target: 5'- gGGGCGggacgcuUGACGGggcCGACccccggcccgcuuaAGCGgUCGGGGg -3' miRNA: 3'- -CCCGC-------ACUGCCa--GCUG--------------UCGU-AGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 41466 | 0.67 | 0.821425 |
Target: 5'- cGGGgGgGGCGGUCGgcgggcccagaaacaACAGCGUCuGGu -3' miRNA: 3'- -CCCgCaCUGCCAGC---------------UGUCGUAGcCCu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 54387 | 0.67 | 0.818074 |
Target: 5'- gGGGCcgcgGcGCGGUCGGCGGgAgcugcCGGGAc -3' miRNA: 3'- -CCCGca--C-UGCCAGCUGUCgUa----GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 138213 | 0.67 | 0.809587 |
Target: 5'- aGGGaggGUG-UGGUCGACGGCG--GGGGu -3' miRNA: 3'- -CCCg--CACuGCCAGCUGUCGUagCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 48608 | 0.67 | 0.809587 |
Target: 5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3' miRNA: 3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 48572 | 0.67 | 0.809587 |
Target: 5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3' miRNA: 3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 48536 | 0.67 | 0.809587 |
Target: 5'- gGGGCGggaggGGCGGgaggGGCGGgAggggCGGGAg -3' miRNA: 3'- -CCCGCa----CUGCCag--CUGUCgUa---GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 8885 | 0.67 | 0.826401 |
Target: 5'- aGGGCGcUGGCGGagGGCggaGGCGaaggUGGGGu -3' miRNA: 3'- -CCCGC-ACUGCCagCUG---UCGUa---GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 83577 | 0.67 | 0.826401 |
Target: 5'- gGGGCgGUGaaacuGCGG--GGCGGcCAUCGGGAc -3' miRNA: 3'- -CCCG-CAC-----UGCCagCUGUC-GUAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 111606 | 0.67 | 0.826401 |
Target: 5'- gGGGCGgccuccugGAgcccCGGgggCGGCAgacucGCGUCGGGGg -3' miRNA: 3'- -CCCGCa-------CU----GCCa--GCUGU-----CGUAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 150106 | 0.67 | 0.850348 |
Target: 5'- gGGGCGgcggaggaagaGGCGGagGACgaGGCcgCGGGGc -3' miRNA: 3'- -CCCGCa----------CUGCCagCUG--UCGuaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 150847 | 0.67 | 0.850348 |
Target: 5'- gGGGCGc--CGGUCGggucGCGGCGggcUGGGAg -3' miRNA: 3'- -CCCGCacuGCCAGC----UGUCGUa--GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 76964 | 0.67 | 0.850348 |
Target: 5'- cGGGCGgaccUGugGGggcugcuggGGCAGUAcCGGGAg -3' miRNA: 3'- -CCCGC----ACugCCag-------CUGUCGUaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 153077 | 0.67 | 0.842545 |
Target: 5'- cGGGCGgagcGGCGG--GGCGGCGcCGGGc -3' miRNA: 3'- -CCCGCa---CUGCCagCUGUCGUaGCCCu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 2441 | 0.67 | 0.842545 |
Target: 5'- cGGCGgcUGGCGG-CGcCAGCcgcccugcggGUCGGGGc -3' miRNA: 3'- cCCGC--ACUGCCaGCuGUCG----------UAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 39856 | 0.67 | 0.834561 |
Target: 5'- cGGGCGaGGC-GUCGA-GGCuUCGGGGg -3' miRNA: 3'- -CCCGCaCUGcCAGCUgUCGuAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 153773 | 0.67 | 0.827225 |
Target: 5'- gGGGCGcuGCGGcccgcgcuccuugcgCGGCGGCggCGGGGg -3' miRNA: 3'- -CCCGCacUGCCa--------------GCUGUCGuaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 20342 | 0.67 | 0.809587 |
Target: 5'- uGGCGcaGGCGGUUggcgcugccgGGCGGguUCGGGGc -3' miRNA: 3'- cCCGCa-CUGCCAG----------CUGUCguAGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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