miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 154465 0.67 0.851616
Target:  5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3'
miRNA:   3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 64209 0.67 0.851616
Target:  5'- -aCCCCGA---UCGGaGCGCUGUUGCu -3'
miRNA:   3'- uaGGGGCUuuuGGUCgCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 76940 0.67 0.851616
Target:  5'- -cCCCCGGAAgucacGgCGGCGCugCGg-GCg -3'
miRNA:   3'- uaGGGGCUUU-----UgGUCGCGugGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 122469 0.67 0.850829
Target:  5'- -cCCCCGcgGcCCAGacggcgcUGCugCGUCGCu -3'
miRNA:   3'- uaGGGGCuuUuGGUC-------GCGugGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 88805 0.67 0.849248
Target:  5'- -aCUCCGc---CCAGCGCGCgucacguacgcgcgCGUCGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGCGUG--------------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 101460 0.67 0.848455
Target:  5'- cUCCCCGugguagucuuCCGG-GCcuuCCGUCGCg -3'
miRNA:   3'- uAGGGGCuuuu------GGUCgCGu--GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 84777 0.67 0.846863
Target:  5'- --gCCCGGcguacgucaggagggAGGCCAGcCGCugCGUcCGCg -3'
miRNA:   3'- uagGGGCU---------------UUUGGUC-GCGugGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 152635 0.67 0.843655
Target:  5'- aGUCCCC-----CCGGCGCcccGCCGgCGCg -3'
miRNA:   3'- -UAGGGGcuuuuGGUCGCG---UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 102534 0.67 0.843655
Target:  5'- cGUCCCCGc-GGCCGGCagGCCGcaCGCg -3'
miRNA:   3'- -UAGGGGCuuUUGGUCGcgUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 31130 0.67 0.843655
Target:  5'- -cCCCCGAAG---AGCGCcCCGgCGCg -3'
miRNA:   3'- uaGGGGCUUUuggUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 27471 0.67 0.843655
Target:  5'- aGUCCCCGuccugccgcgcgGGGGCgGGCGCgggaaaaaaGCCG-CGCg -3'
miRNA:   3'- -UAGGGGC------------UUUUGgUCGCG---------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 17805 0.67 0.843655
Target:  5'- -aCCCCG-GGAUgAGCGCuCCGuggaUCGCg -3'
miRNA:   3'- uaGGGGCuUUUGgUCGCGuGGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 131343 0.67 0.843655
Target:  5'- -gCCCCGGGcgcGACguCGGCGC-CCGgCGCg -3'
miRNA:   3'- uaGGGGCUU---UUG--GUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 78226 0.67 0.843655
Target:  5'- gAUCgCCUGGAcGCCAuccgggccgacGUGCACCGggCGCu -3'
miRNA:   3'- -UAG-GGGCUUuUGGU-----------CGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 70582 0.67 0.842848
Target:  5'- -gCCCUGggGccggugcgcguccGCCAGUGUGCCGUgGa -3'
miRNA:   3'- uaGGGGCuuU-------------UGGUCGCGUGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 152376 0.67 0.835501
Target:  5'- -cUCCCGccGGGCCGcCGCuCCGUCGCu -3'
miRNA:   3'- uaGGGGCu-UUUGGUcGCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 53345 0.67 0.835501
Target:  5'- cGUCCCCGAGAGCCugaucguagacgGGCuCGCCa--GCg -3'
miRNA:   3'- -UAGGGGCUUUUGG------------UCGcGUGGcagCG- -5'
5504 5' -56.2 NC_001798.1 + 95592 0.67 0.835501
Target:  5'- -gCCCUGGucAGCCAGCucgGCGCCGcCGg -3'
miRNA:   3'- uaGGGGCUu-UUGGUCG---CGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 39411 0.67 0.835501
Target:  5'- -gCUCCG-GGACCggGGCGCGgCCGUcCGCg -3'
miRNA:   3'- uaGGGGCuUUUGG--UCGCGU-GGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 10428 0.68 0.827164
Target:  5'- -aCCaCCGAc-GCCacuuGGCGCGCCucGUCGCu -3'
miRNA:   3'- uaGG-GGCUuuUGG----UCGCGUGG--CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.